Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   D9Y32_RS13700 Genome accession   NZ_CP033218
Coordinates   2665447..2667780 (+) Length   777 a.a.
NCBI ID   WP_142782875.1    Uniprot ID   -
Organism   Bacillus licheniformis strain TCCC 11148     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2660447..2672780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9Y32_RS13680 (D9Y32_13700) spoVB 2660684..2662237 (-) 1554 WP_142782483.1 stage V sporulation protein B -
  D9Y32_RS13685 (D9Y32_13705) - 2662355..2662651 (+) 297 WP_003183971.1 post-transcriptional regulator -
  D9Y32_RS13690 (D9Y32_13710) secDF 2662688..2664913 (+) 2226 WP_142782484.1 protein translocase subunit SecDF -
  D9Y32_RS13695 (D9Y32_13715) - 2665066..2665359 (+) 294 WP_011198159.1 lipopolysaccharide assembly LapA domain-containing protein -
  D9Y32_RS13700 (D9Y32_13720) recJ 2665447..2667780 (+) 2334 WP_142782875.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  D9Y32_RS13705 (D9Y32_13725) - 2667798..2668310 (+) 513 WP_003183964.1 adenine phosphoribosyltransferase -
  D9Y32_RS13710 (D9Y32_13730) - 2668481..2670682 (+) 2202 Protein_2654 RelA/SpoT family protein -
  D9Y32_RS13715 (D9Y32_13735) dtd 2670696..2671139 (+) 444 WP_003183959.1 D-aminoacyl-tRNA deacylase -
  D9Y32_RS13720 (D9Y32_13740) - 2671167..2672750 (-) 1584 WP_003183955.1 SH3 domain-containing protein -

Sequence

Protein


Download         Length: 777 a.a.        Molecular weight: 87173.66 Da        Isoelectric Point: 4.9171

>NTDB_id=322730 D9Y32_RS13700 WP_142782875.1 2665447..2667780(+) (recJ) [Bacillus licheniformis strain TCCC 11148]
MRWDVQTPDKEKVEQLAGRLGITPLAASLLVMRGYDTADKASSFLYGNDARFHDPYLLKDMEKAVRRIKQAISDQEKIMI
YGDYDADGVTSTTVLLQMLKKCSAQADFYIPDRFKEGYGPNEAAFRGIKESGYSLIITVDTGIAGVHEAEVAKELGIDLI
ITDHHEPGPVLPDAYAIIHPKQPGCGYPFKELAGVGVAFKLAHALNGELPEDLLDLCAIGTIADLVPLHDENRQIAKRGM
EQFRKTKRPGLKALAKIAGAEIHNADEETIGFQIAPRLNAVGRIEQADPAVYLLNTEDEREAEELAEDINALNKERQKIV
NQMTEEAVQMIEEEGLDQPVIVVARPGWNPGVVGIVASKLVERFYRPAIVLGVDEEKGIAKGSARSIKGFDLFQNLSECR
DILPHFGGHPMAAGMTLNLEDVSALRERINRQAEAVLTEADFIPVQDVDLCCRLEDISVDSIAEMNLLAPFGTGNPKPFV
LVSDVKIDDARKIGANKNHLKLVLADDGNKLDCIGFYKGDIEEGIVPGAKISIVGELSINEWNNRKKPQLMIKDAAVNEW
QLFDLRGKRSWEEKILKLDPAKRACICFREETKAKLAGTGLEEELTVISGPEDAERLDLESRYAVFIDIPQSLDIFDHVI
NGKKLERIYLIFYQSDEHFFSTFPTREYFKWYYAFLLKRGSFDLPKYGGELARHKGWTKDTIDFMTKVFFELGFVTIENG
VLSVVYHAEKRDLTDSETYREKQRLIELEQKLIYSSADELKQWLDKRMAEKAGAYKV

Nucleotide


Download         Length: 2334 bp        

>NTDB_id=322730 D9Y32_RS13700 WP_142782875.1 2665447..2667780(+) (recJ) [Bacillus licheniformis strain TCCC 11148]
ATGCGTTGGGACGTGCAAACGCCCGACAAAGAAAAGGTGGAGCAGCTCGCCGGAAGGTTAGGCATTACTCCCCTTGCCGC
CTCATTGCTTGTCATGAGAGGTTACGATACAGCCGACAAAGCATCTTCATTTTTATATGGCAATGATGCACGTTTTCACG
ATCCTTATCTGCTGAAAGATATGGAAAAAGCTGTACGGCGAATCAAACAGGCAATTTCAGATCAAGAAAAGATTATGATT
TACGGCGATTATGATGCGGACGGTGTGACAAGCACGACTGTCCTTTTGCAAATGTTGAAAAAATGTTCAGCACAAGCCGA
TTTTTATATACCTGACCGCTTTAAAGAAGGGTACGGTCCGAATGAAGCGGCCTTTCGCGGGATCAAAGAATCAGGCTATT
CATTGATCATTACAGTTGACACAGGCATTGCCGGCGTTCATGAAGCTGAAGTCGCTAAAGAGCTCGGCATCGACCTGATC
ATTACGGATCACCATGAGCCGGGTCCCGTTTTGCCGGATGCTTATGCGATCATTCATCCGAAACAGCCGGGCTGCGGCTA
TCCATTTAAAGAGCTTGCCGGCGTCGGTGTGGCATTTAAGCTTGCCCATGCCTTGAACGGAGAGCTTCCGGAAGATTTGC
TCGACCTTTGTGCGATCGGTACGATTGCCGATCTTGTGCCGCTTCATGATGAAAACAGGCAGATAGCCAAGCGCGGCATG
GAACAGTTCAGGAAAACGAAGCGCCCAGGATTAAAAGCGCTGGCGAAAATTGCCGGAGCGGAGATACATAACGCGGATGA
AGAGACCATCGGTTTTCAAATCGCGCCCCGCTTAAACGCGGTCGGCAGAATTGAACAGGCTGACCCGGCCGTTTACCTCC
TGAACACAGAAGACGAAAGAGAAGCGGAAGAGCTTGCTGAGGACATCAACGCCTTGAACAAGGAGCGCCAAAAAATCGTC
AATCAGATGACAGAGGAAGCCGTTCAGATGATCGAGGAGGAAGGCCTTGACCAGCCTGTGATCGTCGTAGCGCGGCCGGG
CTGGAATCCTGGCGTCGTGGGAATCGTGGCTTCAAAGCTTGTCGAGCGGTTTTACAGGCCCGCCATCGTCCTTGGCGTCG
ATGAAGAAAAAGGAATTGCCAAAGGATCTGCGCGCAGCATCAAAGGATTTGATTTATTTCAAAACCTTTCCGAGTGCCGG
GATATTCTCCCGCACTTCGGCGGCCACCCGATGGCAGCCGGAATGACGCTCAACCTGGAAGACGTTTCGGCTCTGAGGGA
GAGAATCAACCGTCAGGCTGAAGCGGTTCTGACCGAGGCAGATTTTATCCCCGTCCAAGACGTCGATTTGTGCTGCCGGC
TCGAAGATATATCGGTTGACAGCATTGCTGAAATGAACTTGCTGGCGCCGTTCGGCACGGGAAACCCGAAGCCGTTCGTT
CTTGTCAGCGACGTAAAAATTGATGACGCCAGAAAAATCGGCGCCAACAAGAATCATTTGAAGCTTGTGCTTGCAGACGA
CGGGAACAAGCTCGATTGCATCGGATTTTATAAAGGCGATATCGAAGAAGGAATCGTTCCTGGAGCAAAGATCTCGATTG
TCGGGGAACTGTCGATTAACGAATGGAATAACAGAAAAAAACCGCAGCTGATGATCAAAGATGCGGCCGTCAATGAATGG
CAGCTGTTTGATCTGCGGGGAAAACGGTCATGGGAAGAAAAAATATTGAAGCTGGACCCTGCGAAACGGGCGTGCATCTG
CTTCCGCGAGGAAACAAAAGCAAAGCTGGCAGGGACAGGCCTTGAAGAAGAGCTGACCGTCATCAGCGGCCCTGAAGATG
CAGAGCGGCTCGACCTTGAGAGCCGTTATGCGGTATTTATAGATATTCCGCAGTCGCTCGACATCTTTGATCATGTAATA
AACGGCAAAAAGCTGGAGCGCATTTATCTGATTTTTTATCAATCAGACGAACATTTTTTCTCAACATTCCCAACAAGGGA
ATATTTTAAATGGTACTATGCTTTCCTCCTGAAAAGAGGTTCTTTTGACTTGCCGAAATACGGCGGAGAGCTTGCCAGAC
ATAAAGGCTGGACAAAAGACACAATTGATTTTATGACAAAGGTGTTTTTTGAGCTCGGTTTTGTTACAATAGAGAATGGT
GTTTTATCTGTTGTTTATCATGCCGAAAAGCGCGATTTAACAGATTCTGAAACCTACCGGGAAAAACAGCGCCTGATTGA
ATTGGAGCAAAAGCTCATTTATTCTTCGGCGGATGAGCTTAAACAGTGGCTGGATAAGCGGATGGCGGAAAAAGCCGGCG
CTTATAAAGTATGA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(310-431)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(561-764)

DHH family (DHH)

(77-221)

RecJ OB domain (RecJ_OB)

(448-554)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

68.428

99.871

0.683

Multiple sequence alignment