Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   FF960_RS06495 Genome accession   NZ_CP040625
Coordinates   1297508..1298281 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain JKD6004-DR     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1292508..1303281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FF960_RS06475 (FF960_06495) trmFO 1292852..1294159 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  FF960_RS06480 (FF960_06500) xerC 1294576..1295472 (+) 897 WP_001015597.1 tyrosine recombinase XerC -
  FF960_RS06485 (FF960_06505) hslV 1295469..1296014 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  FF960_RS06490 (FF960_06510) hslU 1296080..1297483 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  FF960_RS06495 (FF960_06515) codY 1297508..1298281 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  FF960_RS06500 (FF960_06520) - 1298332..1298424 (+) 93 WP_001790530.1 hypothetical protein -
  FF960_RS06505 (FF960_06525) rpsB 1298623..1299390 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  FF960_RS06510 (FF960_06530) - 1299424..1299537 (+) 114 WP_001789890.1 hypothetical protein -
  FF960_RS06515 (FF960_06535) tsf 1299572..1300453 (+) 882 WP_000201387.1 translation elongation factor Ts -
  FF960_RS06520 (FF960_06540) pyrH 1300590..1301312 (+) 723 WP_000057330.1 UMP kinase -
  FF960_RS06525 (FF960_06545) frr 1301331..1301885 (+) 555 WP_001280006.1 ribosome recycling factor -
  FF960_RS06530 (FF960_06550) - 1302258..1303028 (+) 771 WP_000473701.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=322534 FF960_RS06495 WP_000055337.1 1297508..1298281(+) (codY) [Staphylococcus aureus strain JKD6004-DR]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=322534 FF960_RS06495 WP_000055337.1 1297508..1298281(+) (codY) [Staphylococcus aureus strain JKD6004-DR]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428