Detailed information NTG0322447

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: D2B33_RS11270
• Genome accession: NZ_CP033198
• Coordinates: 2221365..2222144 (-)
• Length: 259 a.a.
• NCBI ID: WP_003181756.1
• Uniprot ID: A0A1Y0YKK2
• Organism: Bacillus paralicheniformis strain FA6
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 2216365..2227144

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D2B33_RS11240 (D2B33_11385)	fliH	2216408..2217175 (-)	768	WP_020451392.1	flagellar assembly protein FliH	-
D2B33_RS11245 (D2B33_11390)	fliG	2217159..2218175 (-)	1017	WP_020451391.1	flagellar motor switch protein FliG	-
D2B33_RS11250 (D2B33_11395)	fliF	2218189..2219727 (-)	1539	WP_228119643.1	flagellar basal-body MS-ring/collar protein FliF	-
D2B33_RS11255 (D2B33_11400)	fliE	2219841..2220158 (-)	318	WP_020451389.1	flagellar hook-basal body complex protein FliE	-
D2B33_RS11260 (D2B33_11405)	flgC	2220172..2220624 (-)	453	WP_020451388.1	flagellar basal body rod protein FlgC	-
D2B33_RS11265 (D2B33_11410)	flgB	2220624..2221013 (-)	390	WP_020451387.1	flagellar basal body rod protein FlgB	-
D2B33_RS11270 (D2B33_11415)	codY	2221365..2222144 (-)	780	WP_003181756.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
D2B33_RS11275 (D2B33_11420)	hslU	2222183..2223586 (-)	1404	WP_020451385.1	HslU--HslV peptidase ATPase subunit	-
D2B33_RS11280 (D2B33_11425)	hslV	2223603..2224148 (-)	546	WP_020451384.1	ATP-dependent protease subunit HslV	-
D2B33_RS11285 (D2B33_11430)	xerC	2224162..2225076 (-)	915	WP_020451383.1	tyrosine recombinase XerC	-
D2B33_RS11290 (D2B33_11435)	trmFO	2225143..2226447 (-)	1305	WP_020451382.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29073.42 Da
• Isoelectric Point: 4.8196

>NTDB_id=322447 D2B33_RS11270 WP_003181756.1 2221365..2222144(-) (codY) [Bacillus paralicheniformis strain FA6]
MALLQKTRKINAMLQNAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGFSINQQIENDRMKKMLEERQFPEDYTKSLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTVVPIIGGGERLGTLILSRLQEKFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLMELEKLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=322447 D2B33_RS11270 WP_003181756.1 2221365..2222144(-) (codY) [Bacillus paralicheniformis strain FA6]
ATGGCTTTATTACAAAAAACAAGAAAGATTAATGCAATGCTGCAAAATGCGGCAGGGAAGCCGGTTAATTTTAAAGAAAT
GGCCGAAACGCTTCGCGATGTGATTGATTCGAACATTTTCGTCGTCAGCCGCAGAGGAAAGCTTCTCGGTTTCTCGATCA
ACCAGCAGATCGAAAATGACCGGATGAAAAAAATGCTTGAAGAGCGCCAGTTTCCTGAAGACTATACAAAAAGTCTGTTC
AACATTCCGGAAACTTCATCCAACCTTGACATTAACAGCGAATATACGGCTTTCCCTGTGGAAAACCGCGATTTGTTCCA
AGCGGGTCTGACCACAGTCGTTCCGATCATCGGAGGAGGCGAAAGACTCGGCACCTTGATTCTGTCCCGCCTTCAGGAGA
AATTCGAGGATGACGATCTGATCCTTGCCGAATATGGCGCAACGGTCGTAGGAATGGAAATTCTCAGAGAGAAAGCTGAA
GAGATCGAAGAGGAAGCACGCAGCAAAGCGGTCGTTCAAATGGCGATCAGTTCATTATCTTACAGCGAGCTTGAAGCAAT
TGAACATATTTTTGAAGAGCTTGACGGAAATGAAGGTCTGCTTGTCGCAAGTAAAATTGCAGACCGCGTCGGCATCACCC
GCTCGGTCATTGTCAATGCGCTGCGCAAACTTGAAAGCGCCGGTGTCATTGAATCAAGGTCATTAGGGATGAAAGGCACA
TACATTAAAGTCCTGAACAACAAATTTTTAATGGAATTAGAAAAACTAAAGTCTCATTAA

Domains

Predicted by InterproScan.

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

• CodY GAF-like domain (CodY) (3-178)

3D structure

• AlphaFold DB: A0A1Y0YKK2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	94.595	100	0.946
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.451	98.456	0.467