Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutS/mutS2   Type   Machinery gene
Locus tag   GALLO_RS09960 Genome accession   NC_013798
Coordinates   2015410..2017746 (-) Length   778 a.a.
NCBI ID   WP_012962477.1    Uniprot ID   -
Organism   Streptococcus gallolyticus UCN34     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2010410..2022746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GALLO_RS09945 (GALLO_1937) nadA 2011487..2012407 (+) 921 WP_009854932.1 quinolinate synthase NadA -
  GALLO_RS11640 (GALLO_1938) - 2012826..2013074 (+) 249 Protein_1926 helix-turn-helix domain-containing protein -
  GALLO_RS09950 (GALLO_1939) - 2013130..2013819 (+) 690 WP_052308403.1 hypothetical protein -
  GALLO_RS09955 (GALLO_1940) - 2013812..2015362 (+) 1551 WP_009854935.1 ATP-binding cassette domain-containing protein -
  GALLO_RS09960 (GALLO_1941) mutS/mutS2 2015410..2017746 (-) 2337 WP_012962477.1 endonuclease MutS2 Machinery gene
  GALLO_RS09965 (GALLO_1942) - 2017852..2018400 (-) 549 WP_012962478.1 CvpA family protein -
  GALLO_RS09970 (GALLO_1943) zapA 2018403..2018711 (-) 309 WP_009854938.1 cell division protein ZapA -
  GALLO_RS09975 (GALLO_1944) - 2018877..2019452 (-) 576 WP_012962479.1 TMEM175 family protein -
  GALLO_RS09980 (GALLO_1945) - 2019485..2020129 (-) 645 WP_012962480.1 nitroreductase -
  GALLO_RS09985 (GALLO_1946) - 2020142..2021284 (-) 1143 WP_012962481.1 NADH-dependent flavin oxidoreductase -
  GALLO_RS09990 (GALLO_1947) - 2021419..2021787 (+) 369 WP_012962482.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87625.04 Da        Isoelectric Point: 6.2302

>NTDB_id=32220 GALLO_RS09960 WP_012962477.1 2015410..2017746(-) (mutS/mutS2) [Streptococcus gallolyticus UCN34]
MNNRILEQLEFDKVKQLFAGYLQTEQGQDELRKLEPMTEPDRISRSFDEMSDMEQIFIEHHSFGMGSLRDISESMRRLEL
DADVNISEIIDIKKVLQVSAEIKHFYNDLENVELSALNTLFEKIELLPSLQGSLQAINDGGFIENFASSELDRIRRQINH
DEGRVRQILQDILKKQADHLTETLIASRNGRAVLPVKNSYRNRISGVVHDISASGSTVYIEPRAVVQLNEEITQLRADER
HEMARILRELSNMLRPHTNIIRNNAWVLGHLDFVRAKFLFMQENNAIVPQLSADKTVQLLQARHPLLIDPVANDLHFLNE
LTVIVITGPNTGGKTVMLKTLGLAQLMAQSGLPILADKGSKVAVFNEIFADIGDEQSIEQSLSTFSSHMTNIVEILAAAD
KDSLVLVDELGAGTDPQEGASLAIAILEHLRLMEIKTMATTHYPELKAYGIETEFVENASMEFDTETLSPTYHFMQGVPG
RSNAFEIARRLGLAEIIVNEAERLTDSDTDVNRIIERLEEQTHESRKRLDHIKEVEQDNLKFNRAVKKLYNEFSHAKDKE
LEKASAKAQEIVDKAMAESEEILKNLHDRASLKPHEVIEAKSQLKKLAPEVDLSKNKVLKKAKKLRAPRVGDDIVVTAYG
QRGTLVNQGKNGKWEVQVGLIKMTLKEDEFTLVKVQEEAQKPKKKQVNVVKKSKKAAGPRARLDLRGKRYEEAMQELDEF
IDQALLNNMAQVDIIHGIGTGVIREGVTKYLRRNKHVKSFGYAPQNAGGSGCTIANLG

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=32220 GALLO_RS09960 WP_012962477.1 2015410..2017746(-) (mutS/mutS2) [Streptococcus gallolyticus UCN34]
ATGAACAACAGAATTTTAGAACAGTTAGAATTTGATAAAGTCAAGCAACTTTTTGCTGGCTATTTACAGACTGAGCAAGG
CCAAGACGAGTTACGTAAACTTGAGCCAATGACTGAGCCTGACCGCATTTCACGTTCTTTTGATGAAATGTCGGACATGG
AACAGATTTTCATTGAACACCATTCTTTTGGAATGGGCAGTTTGCGTGACATTTCTGAAAGTATGCGTCGCTTGGAATTG
GATGCTGACGTTAATATCTCAGAAATTATCGACATCAAGAAAGTCTTGCAAGTCTCAGCTGAAATCAAACATTTTTATAA
TGATTTGGAAAATGTAGAGTTGTCTGCATTAAATACTCTTTTTGAGAAGATTGAATTGTTGCCAAGTCTGCAAGGTAGCT
TACAAGCGATTAATGACGGTGGTTTCATTGAAAATTTTGCAAGTTCAGAATTGGACCGTATTCGTCGCCAAATCAATCAT
GACGAAGGTAGAGTTCGTCAAATTTTGCAGGATATTTTGAAAAAACAAGCTGATCATTTGACAGAGACTCTGATTGCTAG
TCGTAATGGTCGTGCGGTTTTGCCTGTGAAAAATAGCTACCGCAACCGTATTTCAGGGGTTGTGCATGATATTTCGGCAT
CAGGAAGTACGGTTTACATTGAACCGCGCGCAGTAGTGCAACTTAATGAAGAAATCACGCAATTGCGAGCAGATGAACGT
CACGAAATGGCACGTATTTTACGTGAATTGTCAAATATGCTTCGCCCACATACTAATATTATTCGTAACAATGCGTGGGT
TTTAGGGCATTTGGATTTTGTTCGGGCTAAGTTCCTCTTCATGCAGGAAAACAACGCAATCGTGCCACAATTATCAGCAG
ATAAAACCGTACAACTATTACAAGCTCGCCACCCGCTTTTGATCGATCCAGTCGCCAATGACCTTCATTTTCTTAACGAA
TTGACCGTTATTGTCATTACAGGACCAAATACTGGTGGTAAGACAGTCATGTTGAAAACATTGGGCTTAGCGCAGCTTAT
GGCACAATCAGGTTTGCCAATCTTGGCTGACAAAGGTAGTAAAGTCGCCGTATTTAATGAGATTTTTGCAGATATTGGCG
ATGAACAATCTATCGAACAAAGTTTGTCAACATTCTCAAGTCATATGACAAATATTGTTGAGATTTTGGCAGCCGCAGAT
AAAGATAGTCTTGTCTTGGTCGATGAATTGGGAGCAGGAACTGACCCGCAAGAAGGTGCCAGTCTTGCGATTGCTATTCT
TGAACACCTTCGCCTCATGGAAATTAAAACCATGGCAACGACACATTATCCAGAATTGAAAGCTTACGGTATTGAGACAG
AATTTGTGGAAAATGCCAGTATGGAATTTGATACAGAGACGTTAAGTCCGACTTATCATTTTATGCAAGGTGTACCAGGG
CGCTCAAATGCCTTTGAAATTGCTCGTCGTCTTGGTTTAGCAGAGATTATTGTCAATGAAGCAGAGCGTTTGACGGATTC
TGATACGGATGTTAACCGCATCATCGAGCGTTTGGAAGAACAAACCCATGAAAGCCGTAAACGCCTTGACCATATCAAAG
AAGTGGAACAAGATAACCTCAAATTCAATCGTGCGGTCAAGAAACTTTACAACGAATTTTCACATGCCAAGGACAAAGAA
CTTGAAAAAGCTAGCGCCAAAGCGCAAGAAATTGTGGATAAAGCCATGGCAGAGAGTGAAGAAATTCTCAAAAATCTTCA
TGATAGAGCAAGCCTTAAACCGCATGAAGTTATTGAAGCCAAAAGTCAGCTGAAAAAATTGGCGCCTGAAGTTGATTTGT
CGAAAAATAAAGTCCTCAAGAAAGCTAAAAAATTGCGCGCACCGCGTGTGGGTGATGACATTGTCGTCACAGCTTACGGA
CAACGCGGAACATTGGTTAACCAAGGGAAAAACGGGAAATGGGAAGTGCAAGTTGGTCTTATTAAAATGACACTTAAAGA
GGACGAATTTACCCTTGTTAAAGTTCAAGAGGAAGCCCAAAAGCCGAAGAAAAAACAAGTCAATGTGGTCAAGAAAAGCA
AAAAAGCAGCTGGTCCACGTGCCCGCCTTGATCTTCGTGGTAAACGCTATGAAGAAGCCATGCAAGAATTGGATGAATTT
ATCGACCAAGCCTTGCTAAATAACATGGCACAAGTCGATATTATTCACGGTATCGGAACAGGTGTTATCCGTGAAGGTGT
CACAAAATACCTTCGTCGCAACAAACACGTCAAATCATTTGGCTACGCCCCACAAAACGCAGGTGGCAGCGGCTGCACCA
TTGCAAATCTAGGTTGA

Domains

Predicted by InterProScan.

MutS domain V (MutS_V)

(324-505)

MutS2 and Smr-associated SH3 domain (MSSS)

(630-669)

Smr domain (Smr)

(703-776)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutS/mutS2 Bacillus subtilis subsp. subtilis str. 168

41.013

100

0.416

Multiple sequence alignment