Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   GALLO_RS09645 Genome accession   NC_013798
Coordinates   1947348..1948133 (-) Length   261 a.a.
NCBI ID   WP_003066268.1    Uniprot ID   A0A4R5G5Z8
Organism   Streptococcus gallolyticus UCN34     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1942348..1953133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GALLO_RS09620 (GALLO_1871) - 1942397..1943305 (-) 909 WP_009854863.1 DMT family transporter -
  GALLO_RS09625 (GALLO_1872) gatB 1943466..1944908 (-) 1443 WP_009854864.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  GALLO_RS09630 (GALLO_1873) gatA 1944908..1946374 (-) 1467 WP_012962445.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  GALLO_RS09635 (GALLO_1874) gatC 1946374..1946676 (-) 303 WP_009854866.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  GALLO_RS09640 (GALLO_1875) - 1946800..1947348 (-) 549 WP_009854867.1 cysteine hydrolase family protein -
  GALLO_RS09645 (GALLO_1876) codY 1947348..1948133 (-) 786 WP_003066268.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  GALLO_RS09650 (GALLO_1877) - 1948346..1949560 (-) 1215 WP_009854868.1 pyridoxal phosphate-dependent aminotransferase -
  GALLO_RS09655 (GALLO_1878) - 1949597..1951363 (-) 1767 WP_009854869.1 glycerophosphoryl diester phosphodiesterase membrane domain-containing protein -
  GALLO_RS09660 (GALLO_1879) - 1951687..1952139 (+) 453 WP_009854870.1 universal stress protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28860.04 Da        Isoelectric Point: 4.4574

>NTDB_id=32215 GALLO_RS09645 WP_003066268.1 1947348..1948133(-) (codY) [Streptococcus gallolyticus UCN34]
MPNLLEKTRKITSILQRSVDSLDTELPYNTMAAQLADIIDCNACIINGGGNLLGYAMKYKTNTDRVEEFFDAKQFPESYV
KAASRVYDTEANLSVDNELTIFPVESKDIYPDGLTTIAPIYGGGMRLGSLIIWRNDKEFLEDDLILVEIASTVVGIQLLN
LQTENLEETIRKQTAVNMAINTLSYSEMKAVSAILGELDGTEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVINEGIFDKLKEYN

Nucleotide


Download         Length: 786 bp        

>NTDB_id=32215 GALLO_RS09645 WP_003066268.1 1947348..1948133(-) (codY) [Streptococcus gallolyticus UCN34]
ATGCCGAATTTATTAGAAAAAACACGAAAGATTACATCAATTTTGCAACGCTCTGTTGACAGCTTAGACACTGAATTGCC
ATATAATACAATGGCTGCTCAATTAGCTGATATCATTGATTGTAACGCTTGCATCATCAACGGAGGAGGTAACCTTCTTG
GTTATGCAATGAAGTATAAAACAAATACTGACCGCGTAGAGGAATTCTTTGATGCCAAACAATTCCCAGAAAGCTATGTT
AAAGCGGCTAGTCGTGTTTACGACACAGAGGCAAACTTGTCTGTGGATAATGAATTGACTATTTTCCCAGTAGAATCAAA
AGACATCTATCCTGATGGCTTGACAACTATTGCACCAATTTATGGTGGTGGTATGCGTCTAGGTTCTCTTATCATTTGGC
GTAATGATAAAGAGTTTTTAGAAGATGATTTGATTCTTGTTGAAATTGCCTCAACAGTAGTTGGTATCCAATTACTTAAT
CTTCAAACTGAAAATCTTGAAGAAACCATTCGTAAACAAACAGCTGTTAATATGGCTATTAACACGCTATCTTACTCAGA
AATGAAAGCTGTATCAGCTATTTTGGGTGAATTAGACGGTACAGAAGGTCGCTTAACTGCATCAGTTATTGCTGACCGCA
TTGGTATCACACGTTCAGTTATTGTTAATGCCCTACGTAAATTGGAATCTGCGGGGATTATCGAAAGTCGTTCATTGGGT
ATGAAAGGAACTTACCTTAAAGTCATCAATGAAGGTATTTTCGATAAATTAAAGGAATATAATTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-261)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4R5G5Z8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

65.9

100

0.659
  codY Bacillus subtilis subsp. subtilis str. 168

52.227

94.636

0.494

Multiple sequence alignment