Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   EBA16_RS16040 Genome accession   NZ_CP033170
Coordinates   3332510..3332911 (-) Length   133 a.a.
NCBI ID   WP_005913706.1    Uniprot ID   A0AAI7ZH35
Organism   Xanthomonas oryzae pv. oryzae strain Ug11     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3327510..3337911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EBA16_RS16025 (EBA16_15990) - 3329524..3331560 (-) 2037 WP_024744549.1 methyl-accepting chemotaxis protein -
  EBA16_RS16030 (EBA16_15995) - 3331600..3332130 (-) 531 WP_024744550.1 chemotaxis protein CheW -
  EBA16_RS16035 (EBA16_16000) - 3332130..3332492 (-) 363 WP_014504132.1 response regulator -
  EBA16_RS16040 (EBA16_16005) pilG 3332510..3332911 (-) 402 WP_005913706.1 twitching motility response regulator PilG Regulator
  EBA16_RS16045 (EBA16_16010) gshB 3333148..3334098 (+) 951 WP_024744551.1 glutathione synthase -
  EBA16_RS16050 (EBA16_16015) - 3334095..3334970 (+) 876 WP_024744552.1 energy transducer TonB -
  EBA16_RS16055 (EBA16_16020) - 3335262..3336173 (-) 912 WP_024744553.1 ADP-ribosylglycohydrolase family protein -
  EBA16_RS16060 (EBA16_16025) tsaB 3336170..3336889 (-) 720 WP_024744554.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14667.03 Da        Isoelectric Point: 6.9539

>NTDB_id=321910 EBA16_RS16040 WP_005913706.1 3332510..3332911(-) (pilG) [Xanthomonas oryzae pv. oryzae strain Ug11]
MSENIAAGGELAGLKVMVIDDSKTIRRTAETLLKREGCEVVTATDGFEALAKIADQQPQIIFVDIMMPRLDGYQTCALIK
GNQLFKSTPVIMLSSKDGLFDKARGRIVGSEQYLTKPFTREELLSAIRTYVHA

Nucleotide


Download         Length: 402 bp        

>NTDB_id=321910 EBA16_RS16040 WP_005913706.1 3332510..3332911(-) (pilG) [Xanthomonas oryzae pv. oryzae strain Ug11]
ATGAGTGAAAACATTGCTGCGGGTGGGGAACTCGCAGGACTGAAGGTGATGGTGATCGATGATTCGAAAACCATTCGCCG
CACCGCCGAAACGCTACTGAAGCGGGAAGGTTGTGAAGTAGTGACAGCAACGGATGGTTTCGAGGCACTGGCCAAAATTG
CGGACCAGCAACCTCAGATCATTTTTGTTGACATCATGATGCCGCGCCTGGATGGGTACCAGACGTGCGCGTTGATCAAG
GGCAACCAGCTCTTCAAATCGACGCCGGTAATCATGTTGTCGTCCAAGGATGGGCTGTTCGACAAGGCACGCGGCCGCAT
CGTCGGTTCCGAGCAATATCTGACCAAGCCGTTCACCCGTGAAGAACTATTGAGCGCAATCCGCACGTACGTCCACGCCT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

75.207

90.977

0.684

Multiple sequence alignment