Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   FC605_RS08135 Genome accession   NZ_CP040528
Coordinates   1545467..1545916 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain PR10     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1540467..1550916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FC605_RS08095 (FC605_08095) ctaE 1540484..1541107 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  FC605_RS08100 (FC605_08100) ctaF 1541110..1541442 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  FC605_RS08105 (FC605_08105) ctaG 1541470..1542363 (+) 894 WP_046664162.1 cytochrome c oxidase assembly factor CtaG -
  FC605_RS08110 (FC605_08110) ylbA 1542395..1542757 (-) 363 WP_003232238.1 YugN family protein -
  FC605_RS08115 (FC605_08115) ylbB 1542897..1543343 (+) 447 WP_003221362.1 CBS domain-containing protein -
  FC605_RS08120 (FC605_08120) ylbC 1543427..1544467 (+) 1041 WP_080529284.1 CAP domain-containing protein -
  FC605_RS08125 (FC605_08125) ylbD 1544698..1545096 (+) 399 WP_003232233.1 YlbD family protein -
  FC605_RS08130 (FC605_08130) ylbE 1545112..1545351 (+) 240 WP_003232231.1 YlbE-like family protein -
  FC605_RS08135 (FC605_08135) ylbF 1545467..1545916 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  FC605_RS08140 (FC605_08140) ylbG 1545971..1546243 (+) 273 WP_024573211.1 YlbG family protein -
  FC605_RS08145 (FC605_08145) rsmD 1546566..1547120 (+) 555 WP_019258325.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  FC605_RS08150 (FC605_08150) coaD 1547125..1547610 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  FC605_RS08155 (FC605_08155) spoVV 1547621..1548847 (-) 1227 WP_015252149.1 dipicolinic acid transporter SpoVV -
  FC605_RS08160 (FC605_08160) ylbK 1549028..1549810 (+) 783 WP_003232221.1 patatin family protein -
  FC605_RS08165 (FC605_08165) sepM 1549812..1550837 (+) 1026 WP_003245451.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=321902 FC605_RS08135 WP_003221370.1 1545467..1545916(+) (ylbF) [Bacillus subtilis strain PR10]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=321902 FC605_RS08135 WP_003221370.1 1545467..1545916(+) (ylbF) [Bacillus subtilis strain PR10]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGACAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1