Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   D0856_RS14950 Genome accession   NZ_CP033144
Coordinates   3088930..3089655 (+) Length   241 a.a.
NCBI ID   WP_122068455.1    Uniprot ID   -
Organism   Vibrio owensii strain V180403     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3083930..3094655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0856_RS14935 (D0856_14935) - 3085055..3087376 (+) 2322 WP_122068451.1 Tex family protein -
  D0856_RS14940 (D0856_14940) - 3087481..3087945 (-) 465 WP_005430182.1 hypothetical protein -
  D0856_RS14945 (D0856_14945) bioH 3088081..3088845 (-) 765 WP_163000615.1 pimeloyl-ACP methyl ester esterase BioH -
  D0856_RS14950 (D0856_14950) comF 3088930..3089655 (+) 726 WP_122068455.1 phosphoribosyltransferase family protein Machinery gene
  D0856_RS14955 (D0856_14955) nfuA 3089753..3090337 (+) 585 WP_005434470.1 Fe-S biogenesis protein NfuA -
  D0856_RS14960 (D0856_14960) nudE 3090512..3091075 (+) 564 WP_005434477.1 ADP compounds hydrolase NudE -
  D0856_RS14965 (D0856_14965) cysQ 3091120..3091947 (+) 828 WP_005434478.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  D0856_RS14970 (D0856_14970) - 3092234..3092995 (-) 762 WP_039985610.1 type II secretion system protein N -
  D0856_RS14975 (D0856_14975) - 3092997..3093488 (-) 492 WP_009707965.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27554.66 Da        Isoelectric Point: 8.3763

>NTDB_id=321836 D0856_RS14950 WP_122068455.1 3088930..3089655(+) (comF) [Vibrio owensii strain V180403]
MLSHQWQNIMHRVLGSQCGLCRFPISTEQKPNPMRWCDRCFEHLTPIKRCTRCGLKMTEEESHTSTECGGCLKEPPPWQR
LYTLGDYDFPLSNQVQRFKDNGEAWHVGALTQLLAQRIEQPAPVITCVPIHWQRNLKRGFNQSHILAKHLAHHLDVRYED
KVFKRVKSVESQRGNKKASREQNLKGAFTLQGEVNFSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPGS
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=321836 D0856_RS14950 WP_122068455.1 3088930..3089655(+) (comF) [Vibrio owensii strain V180403]
ATGTTATCTCATCAATGGCAAAACATCATGCACCGCGTACTTGGCAGCCAATGTGGTTTGTGTCGATTTCCGATCTCCAC
TGAGCAGAAACCAAACCCAATGCGTTGGTGCGACCGTTGTTTTGAACACCTCACGCCCATCAAACGCTGCACTCGTTGTG
GTTTAAAAATGACAGAAGAGGAATCACATACCTCAACAGAGTGCGGTGGGTGCCTGAAAGAGCCACCACCTTGGCAACGT
TTGTATACGTTGGGGGATTATGATTTCCCACTATCTAACCAAGTACAACGCTTTAAAGACAATGGTGAGGCATGGCATGT
AGGCGCACTCACTCAATTACTGGCTCAACGAATTGAACAGCCAGCTCCAGTGATTACTTGTGTACCAATACATTGGCAAC
GTAATTTAAAGCGAGGATTTAACCAAAGCCATATCTTAGCCAAACACCTCGCCCACCATTTGGATGTGCGATATGAAGAT
AAGGTATTTAAACGCGTTAAAAGCGTCGAATCGCAACGAGGAAACAAAAAAGCCAGTCGTGAGCAGAATTTAAAAGGGGC
ATTTACCCTACAAGGTGAGGTGAACTTTTCCCACGTAGCGATTGTGGATGATGTGGTTACAACAGGTAGTACGGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACTCCTGCCCCAGGCTCA
CTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

87.552

100

0.876
  comF Vibrio cholerae strain A1552

47.059

98.755

0.465

Multiple sequence alignment