Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   D0871_RS16550 Genome accession   NZ_CP033141
Coordinates   3292454..3293179 (+) Length   241 a.a.
NCBI ID   WP_025500554.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 160807     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3287454..3298179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0871_RS16535 (D0871_16535) - 3288557..3290878 (+) 2322 WP_025500550.1 Tex family protein -
  D0871_RS16540 (D0871_16540) - 3291014..3291478 (-) 465 WP_005459035.1 hypothetical protein -
  D0871_RS16545 (D0871_16545) bioH 3291602..3292369 (-) 768 WP_029785296.1 pimeloyl-ACP methyl ester esterase BioH -
  D0871_RS16550 (D0871_16550) comF 3292454..3293179 (+) 726 WP_025500554.1 amidophosphoribosyltransferase Machinery gene
  D0871_RS16555 (D0871_16555) nfuA 3293277..3293861 (+) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  D0871_RS16560 (D0871_16560) nudE 3294082..3294651 (+) 570 WP_021448936.1 ADP compounds hydrolase NudE -
  D0871_RS16565 (D0871_16565) cysQ 3294692..3295519 (+) 828 WP_005458987.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  D0871_RS16570 (D0871_16570) - 3295805..3296566 (-) 762 WP_025500555.1 type II secretion system protein N -
  D0871_RS16575 (D0871_16575) - 3296568..3297059 (-) 492 WP_005458943.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27732.90 Da        Isoelectric Point: 8.9986

>NTDB_id=321805 D0871_RS16550 WP_025500554.1 3292454..3293179(+) (comF) [Vibrio parahaemolyticus strain 160807]
MLSHHWQNIMHRVLSSQCGLCRFPILAAAQPNALRWCDNCYQYLTPVKRCQRCGLSLKAEETNIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQRFKDHGQTWHVRALTQLLAQRISTPAPLITTVPLHWQRYFYRGFNQSDILARHLAGHLNVRFDN
HVFRRVKHVQSQRGYKKSSREQNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=321805 D0871_RS16550 WP_025500554.1 3292454..3293179(+) (comF) [Vibrio parahaemolyticus strain 160807]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCTGGC
TGCCGCTCAACCCAATGCGCTGCGTTGGTGTGATAACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGCTGTG
GATTGAGCTTAAAAGCAGAGGAAACAAATATAGAGAGTATTTGCGGCGAATGCCTCTCCGAGCCTCCACCGTGGCAACGG
CTATTTACCTTGGGAGACTACGATTTTCCGCTGTCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAACATGGCATGT
TCGCGCTTTAACGCAATTGCTTGCCCAACGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTACTTTTATCGAGGCTTTAATCAGAGCGACATACTGGCGCGACATTTGGCTGGTCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGTCCAGTCGCAGCGTGGGTACAAGAAATCCAGTCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATCGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGCT
GTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(146-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

72.199

100

0.722
  comF Vibrio cholerae strain A1552

49.58

98.755

0.49

Multiple sequence alignment