Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   EAE30_RS17630 Genome accession   NZ_CP033078
Coordinates   2688242..2688961 (+) Length   239 a.a.
NCBI ID   WP_241967693.1    Uniprot ID   -
Organism   Vibrio zhugei strain HBUAS61001     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2683242..2693961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EAE30_RS17615 - 2684382..2686703 (+) 2322 WP_123017092.1 Tex family protein -
  EAE30_RS17620 - 2686786..2687259 (-) 474 WP_123017093.1 ATP-dependent Lon protease -
  EAE30_RS17625 bioH 2687395..2688165 (-) 771 WP_123017094.1 pimeloyl-ACP methyl ester esterase BioH -
  EAE30_RS17630 comF 2688242..2688961 (+) 720 WP_241967693.1 ComF family protein Machinery gene
  EAE30_RS17635 nfuA 2689056..2689643 (+) 588 WP_164711905.1 Fe-S biogenesis protein NfuA -
  EAE30_RS17640 nudE 2689737..2690294 (+) 558 WP_123017096.1 ADP compounds hydrolase NudE -
  EAE30_RS17645 cysQ 2690323..2691150 (+) 828 WP_123017097.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  EAE30_RS17650 - 2691216..2691974 (-) 759 WP_123017098.1 type II secretion system protein N -
  EAE30_RS17655 - 2691976..2692485 (-) 510 WP_123017099.1 type II secretion system protein M -
  EAE30_RS17660 gspL 2692495..2693709 (-) 1215 WP_123017100.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 239 a.a.        Molecular weight: 27481.08 Da        Isoelectric Point: 8.7213

>NTDB_id=321228 EAE30_RS17630 WP_241967693.1 2688242..2688961(+) (comF) [Vibrio zhugei strain HBUAS61001]
MMIMLANWWQKNIKRQIPQCCDLCGLSLDSDSIMTLCAACQLALTPQPRCQRCGLTTLSPMRECGRCLKQPPPWHALYCI
GDYRYPLDHYIHQLKYQRQFWLAQPLAQQLATTITEPAPLLCAVPMHWRRYLWRGFNQSDQLAQQLASELHVQYWPSLFH
RRRATIPQKGLHKSQRRHNLAGAFHFTTPIHTLGSHVAIVDDVVTTGSTLKPLCHLLTAIGVTQIDIYCLCRTPEPREA

Nucleotide


Download         Length: 720 bp        

>NTDB_id=321228 EAE30_RS17630 WP_241967693.1 2688242..2688961(+) (comF) [Vibrio zhugei strain HBUAS61001]
ATGATGATTATGTTAGCGAATTGGTGGCAAAAAAACATTAAAAGACAAATACCGCAATGTTGTGACCTGTGCGGATTATC
GCTGGATAGTGATAGCATCATGACACTGTGTGCGGCCTGTCAGTTAGCGCTCACTCCGCAGCCTCGTTGTCAACGCTGCG
GATTAACAACCCTATCGCCGATGCGTGAATGTGGTCGTTGCCTTAAACAGCCTCCCCCTTGGCACGCCCTGTATTGCATC
GGTGACTATCGCTATCCGCTCGATCACTACATCCATCAGCTCAAATATCAGCGCCAATTTTGGCTCGCCCAACCGTTAGC
CCAGCAATTAGCCACCACCATCACTGAGCCGGCTCCGCTATTGTGTGCCGTCCCCATGCACTGGCGACGCTATCTATGGC
GCGGTTTCAACCAAAGTGATCAATTAGCACAACAACTTGCGTCTGAATTACACGTCCAATACTGGCCGTCGTTATTTCAT
CGCCGACGAGCCACGATTCCGCAAAAGGGTCTCCATAAAAGCCAACGCCGACACAATTTGGCGGGGGCGTTTCACTTTAC
CACGCCCATTCATACGCTAGGCTCTCATGTTGCGATAGTCGACGATGTCGTGACGACGGGGAGCACTTTAAAACCGTTGT
GTCACCTGCTCACTGCCATTGGAGTGACCCAGATTGATATCTATTGCTTATGCAGGACGCCTGAGCCCCGTGAAGCTTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(142-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

57.143

99.582

0.569
  comF Vibrio campbellii strain DS40M4

45

100

0.452

Multiple sequence alignment