Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGH   Type   Machinery gene
Locus tag   LLKF_RS11035 Genome accession   NC_013656
Coordinates   2264469..2265407 (-) Length   312 a.a.
NCBI ID   WP_012898520.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis KF147     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2259469..2270407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLKF_RS11010 (LLKF_2195) frr 2259586..2260143 (-) 558 WP_004254618.1 ribosome recycling factor -
  LLKF_RS11015 (LLKF_2196) pyrH 2260356..2261072 (-) 717 WP_004254608.1 UMP kinase -
  LLKF_RS11020 (LLKF_2197) - 2261157..2261609 (-) 453 WP_012898517.1 hypothetical protein -
  LLKF_RS11025 (LLKF_2198) - 2261743..2262930 (-) 1188 WP_012898518.1 acetate kinase -
  LLKF_RS11030 (LLKF_2199) - 2263087..2264274 (-) 1188 WP_012898519.1 acetate kinase -
  LLKF_RS11035 (LLKF_2200) comGH 2264469..2265407 (-) 939 WP_012898520.1 class I SAM-dependent methyltransferase Machinery gene
  LLKF_RS11040 (LLKF_2201) - 2265495..2265746 (-) 252 WP_004254583.1 DUF3165 family protein -
  LLKF_RS11045 (LLKF_2202) typA 2265847..2267679 (-) 1833 WP_025016832.1 translational GTPase TypA -
  LLKF_RS11050 (LLKF_2203) - 2267867..2268325 (-) 459 WP_012898521.1 hypothetical protein -
  LLKF_RS11055 (LLKF_2204) - 2268340..2269113 (-) 774 WP_012898522.1 hypothetical protein -
  LLKF_RS11060 (LLKF_2205) - 2269450..2270076 (-) 627 WP_012898523.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 34798.94 Da        Isoelectric Point: 4.3717

>NTDB_id=32111 LLKF_RS11035 WP_012898520.1 2264469..2265407(-) (comGH) [Lactococcus lactis subsp. lactis KF147]
MDMEKVAQGFELVVANIMLLSEKLDTDFYDAFVEQNAAFLDDTDQGIVELSVNNDKLRQLNLSNKEWQKLFQFVLLKGSQ
VAPLQPNHAMTPDAIGLIFNFIIEHLNKNSELRLIEFGSGMGNLAETLLVNLNKKVDYVGFEVDDLLLDLSASMAEIMGS
QAEFMQIDAVQKRLMEPADVVVSDLPIGFYPDDEVAKNFEVATTDGHTFAHHLLIEQSFNYLKEGSFAIFLAPEDLLTSP
QGPLLKEWISKHGSVMAVITLPKSLFNADAKAIYVLKKGPAAHATFAHPLSSLTDRESLEVFMEEFTKIVKL

Nucleotide


Download         Length: 939 bp        

>NTDB_id=32111 LLKF_RS11035 WP_012898520.1 2264469..2265407(-) (comGH) [Lactococcus lactis subsp. lactis KF147]
ATGGATATGGAAAAAGTGGCTCAAGGTTTTGAGCTAGTTGTTGCAAATATTATGTTACTATCTGAGAAATTGGATACAGA
TTTTTATGATGCTTTTGTAGAACAAAATGCTGCTTTTTTAGATGATACTGACCAAGGAATTGTTGAATTGTCAGTAAATA
ATGACAAACTTCGTCAGTTAAATTTATCAAATAAGGAGTGGCAAAAACTTTTTCAATTTGTTTTGTTGAAAGGGTCACAA
GTCGCACCACTTCAGCCCAATCATGCAATGACTCCAGATGCAATTGGCTTAATTTTTAATTTCATTATTGAACATCTTAA
TAAAAATTCTGAACTTCGTTTAATTGAATTTGGGTCTGGTATGGGTAATCTTGCTGAAACGCTTTTAGTTAATCTTAATA
AAAAGGTTGATTATGTAGGCTTTGAAGTTGATGATTTACTTTTAGATTTGTCTGCTTCAATGGCTGAAATTATGGGGAGT
CAGGCTGAGTTCATGCAAATTGATGCAGTACAAAAGCGTTTGATGGAACCTGCAGACGTTGTTGTCAGTGATTTACCAAT
TGGTTTTTATCCGGATGATGAAGTTGCAAAGAATTTTGAAGTTGCGACTACTGACGGACATACTTTTGCTCATCATCTTT
TGATTGAGCAATCATTTAATTATTTAAAAGAGGGTTCTTTTGCCATTTTCCTAGCTCCAGAAGATTTACTGACAAGTCCT
CAAGGACCACTATTAAAGGAGTGGATTAGTAAACATGGAAGTGTGATGGCTGTCATCACTTTACCAAAATCACTTTTTAA
TGCTGATGCTAAGGCGATTTATGTTTTGAAAAAGGGACCGGCTGCACATGCAACTTTTGCTCACCCTTTGTCTTCACTGA
CAGACAGAGAAAGCTTAGAAGTCTTTATGGAAGAATTTACAAAAATTGTAAAATTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGH Streptococcus mutans UA140

48.882

100

0.49
  comGH Streptococcus mutans UA159

48.562

100

0.487

Multiple sequence alignment