Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   D9777_RS09860 Genome accession   NZ_CP033054
Coordinates   1923650..1924429 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain Bac57     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1918650..1929429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9777_RS09840 trmFO 1919337..1920644 (+) 1308 WP_021493689.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  D9777_RS09845 xerC 1920714..1921631 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  D9777_RS09850 hslV 1921647..1922192 (+) 546 WP_014417767.1 ATP-dependent protease subunit HslV -
  D9777_RS09855 hslU 1922209..1923612 (+) 1404 WP_007611413.1 HslU--HslV peptidase ATPase subunit -
  D9777_RS09860 codY 1923650..1924429 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  D9777_RS09865 flgB 1924783..1925172 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  D9777_RS09870 flgC 1925172..1925624 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  D9777_RS09875 fliE 1925635..1925955 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  D9777_RS09880 fliF 1925998..1927608 (+) 1611 WP_031303988.1 flagellar basal-body MS-ring/collar protein FliF -
  D9777_RS09885 fliG 1927621..1928637 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  D9777_RS09890 fliH 1928630..1929385 (+) 756 WP_017417778.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=320933 D9777_RS09860 WP_003154263.1 1923650..1924429(+) (codY) [Bacillus velezensis strain Bac57]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=320933 D9777_RS09860 WP_003154263.1 1923650..1924429(+) (codY) [Bacillus velezensis strain Bac57]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATCCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCAGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATCACGC
GTTCAGTCATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment