Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   D9779_RS09610 Genome accession   NZ_CP033052
Coordinates   1868489..1869268 (+) Length   259 a.a.
NCBI ID   WP_003238551.1    Uniprot ID   A0A9W5PD99
Organism   Bacillus vallismortis strain Bac111     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1863489..1874268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9779_RS09590 trmFO 1864183..1865490 (+) 1308 WP_010331110.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  D9779_RS09595 xerC 1865557..1866471 (+) 915 WP_010331109.1 tyrosine recombinase XerC -
  D9779_RS09600 clpQ 1866484..1867029 (+) 546 WP_010331108.1 ATP-dependent protease subunit ClpQ -
  D9779_RS09605 hslU 1867046..1868449 (+) 1404 WP_121642565.1 HslU--HslV peptidase ATPase subunit -
  D9779_RS09610 codY 1868489..1869268 (+) 780 WP_003238551.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  D9779_RS09615 flgB 1869652..1870041 (+) 390 WP_010331105.1 flagellar basal body rod protein FlgB -
  D9779_RS09620 flgC 1870041..1870493 (+) 453 WP_010331104.1 flagellar basal body rod protein FlgC -
  D9779_RS09625 fliE 1870505..1870825 (+) 321 WP_010331103.1 flagellar hook-basal body complex protein FliE -
  D9779_RS09630 fliF 1870871..1872478 (+) 1608 WP_121642566.1 flagellar basal-body MS-ring/collar protein FliF -
  D9779_RS09635 fliG 1872491..1873507 (+) 1017 WP_010331101.1 flagellar motor switch protein FliG -
  D9779_RS09640 fliH 1873500..1874252 (+) 753 WP_121642567.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29036.26 Da        Isoelectric Point: 4.7210

>NTDB_id=320857 D9779_RS09610 WP_003238551.1 1868489..1869268(+) (codY) [Bacillus vallismortis strain Bac111]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFHDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=320857 D9779_RS09610 WP_003238551.1 1868489..1869268(+) (codY) [Bacillus vallismortis strain Bac111]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTGAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGACGTAATCGATTCCAATATTTTCGTTGTAAGCCGCAGAGGCAAACTCCTTGGATATTCTATTA
ACCAGCAAATCGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAGTATACAAAAAATCTGTTT
AATGTGCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACCGCTTTCCCTGTTGAGAACAGAGACCTGTTCCA
GGCTGGCTTAACAACAATCGTACCGATCATCGGAGGCGGAGAAAGATTAGGAACGCTCATTCTTTCACGTTTACAGGATC
AATTTCATGACGATGATTTAATTCTCGCAGAATACGGTGCAACTGTTGTCGGAATGGAAATCTTGCGAGAAAAAGCAGAA
GAAATCGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCCATCAGCTCTCTTTCTTATAGTGAGCTTGAAGCGAT
TGAGCACATTTTTGAAGAGCTTGACGGAAACGAAGGCCTGCTCGTTGCAAGTAAAATCGCAGACCGCGTCGGCATTACCC
GTTCTGTTATTGTTAACGCACTGAGAAAGCTGGAAAGCGCCGGTGTCATCGAGTCAAGATCATTAGGAATGAAAGGGACT
TATATTAAAGTCCTTAACAACAAATTCCTAATTGAATTAGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.614

100

0.996
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment