Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   D9842_RS13125 Genome accession   NZ_CP033043
Coordinates   2619900..2622284 (-) Length   794 a.a.
NCBI ID   WP_121662933.1    Uniprot ID   -
Organism   Metabacillus litoralis strain Bac94     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2614900..2627284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9842_RS13105 - 2617869..2618930 (-) 1062 WP_121662930.1 AI-2E family transporter -
  D9842_RS13110 - 2619043..2619174 (-) 132 WP_121662931.1 YrzQ family protein -
  D9842_RS13115 - 2619189..2619380 (-) 192 WP_121665060.1 hypothetical protein -
  D9842_RS13120 - 2619397..2619873 (-) 477 WP_121662932.1 PRC-barrel domain-containing protein -
  D9842_RS13125 recD2 2619900..2622284 (-) 2385 WP_121662933.1 ATP-dependent RecD-like DNA helicase Machinery gene
  D9842_RS13130 - 2622310..2622969 (-) 660 WP_121662934.1 tetratricopeptide repeat protein -
  D9842_RS13135 mnmA 2623089..2624201 (-) 1113 WP_121662935.1 tRNA 2-thiouridine(34) synthase MnmA -
  D9842_RS13140 - 2624225..2625364 (-) 1140 WP_121662936.1 cysteine desulfurase family protein -
  D9842_RS13145 cymR 2625410..2625826 (-) 417 WP_121662937.1 cysteine metabolism transcriptional regulator CymR -
  D9842_RS13150 - 2625837..2626517 (-) 681 WP_180320391.1 YitT family protein -

Sequence

Protein


Download         Length: 794 a.a.        Molecular weight: 89369.33 Da        Isoelectric Point: 4.9172

>NTDB_id=320611 D9842_RS13125 WP_121662933.1 2619900..2622284(-) (recD2) [Metabacillus litoralis strain Bac94]
MQESADLFGEKERYVKGLVKVVIFHNEQNLYSVLKVRVHETSEDIEDKEITVTGYFPLLHEDDTYTFFGSFTNHPKFGLQ
FQTEHFRKEIPQTKEGIIQYLSSDLFKGIGKKTAEAIVEKLGESAISKILQNPSILDDIPKVNKDKAKQLVDALISHQGL
EQIMIALNQFGFGPQLAMKIYQTYQDETLTIIQENPYQLVQDVEGIGFVRADELGEHLGISGKSAERIKAACHYNVEHLC
LQEGHVYVTTEQLIVKTKELLDHSKKETIHESDIANEIIALGKEGKMIVEENRAYLPSLYFAEQGLVKNINKILDQTEYE
DLFPESEFLLSLGNLEERMNVQYAPTQKDAIQKALMSPMLLLTGGPGTGKTTVIKGIVELYSDLHGCSLDPKDYKKEEPF
PIVLVAPTGRAAKRMSEATGMPAVTIHRLLKWNGADGFEHDEENPIAGKLLIIDEVSMVDIWIANQLFKALPKEIQVIMV
GDEDQLPSVGPGQVLRDLLASQVIPTVRLTDIYRQAEGSSIIELAHDIKEGRLPQNIAAPTSDRSFIRCSQVQMKEVIGK
IIQSALKKGYTARDIQILAPMYRGPAGIDQLNKLLQELFNPKASGKRELKFGDVVYRNGDKVLQLVNQPDSNVFNGDIGE
IVSIFYAKENTEKEDMIVVSFDGNEVTYTKQDFNQFTHAFCCSIHKSQGSEFPIVIMPIVKGYYRMLRRNLIYTAVTRSK
KSLVLCGELDALEWGIKNNESSERQTSLMLKLGADQIKDLELDELQKQLPFPLEDANIGMENLTPYDFMEASEI

Nucleotide


Download         Length: 2385 bp        

>NTDB_id=320611 D9842_RS13125 WP_121662933.1 2619900..2622284(-) (recD2) [Metabacillus litoralis strain Bac94]
ATGCAGGAGAGTGCAGATTTATTTGGAGAAAAAGAGCGCTATGTCAAAGGACTAGTTAAGGTTGTTATCTTTCATAATGA
ACAAAATCTTTATTCAGTGCTAAAAGTAAGAGTACATGAAACGAGTGAAGATATAGAAGATAAAGAAATAACTGTTACTG
GTTACTTTCCCCTCCTGCATGAAGATGATACCTACACTTTTTTTGGGTCGTTTACAAATCATCCTAAGTTTGGACTACAA
TTTCAAACCGAACATTTTCGAAAGGAAATTCCTCAAACAAAAGAAGGGATCATACAATATCTTTCAAGTGATCTTTTTAA
AGGTATCGGAAAAAAAACAGCGGAAGCAATCGTTGAAAAATTGGGTGAATCCGCTATTTCGAAAATTTTACAAAACCCCT
CCATTTTGGATGATATTCCTAAGGTGAATAAAGATAAAGCAAAACAATTGGTTGATGCGCTAATTTCTCATCAAGGTCTT
GAGCAAATCATGATTGCGCTAAATCAGTTTGGATTTGGTCCACAGCTTGCGATGAAGATCTATCAAACTTACCAAGATGA
AACATTAACCATCATTCAGGAGAATCCTTATCAATTGGTACAGGATGTAGAAGGAATTGGTTTTGTTCGCGCTGATGAGC
TTGGAGAACACCTTGGTATTTCGGGGAAAAGTGCTGAACGTATTAAAGCAGCTTGTCATTACAATGTCGAGCACCTTTGC
CTACAGGAAGGTCATGTTTATGTGACAACTGAGCAACTAATTGTTAAAACAAAGGAACTCCTTGATCACTCTAAGAAAGA
AACCATTCACGAGTCTGATATTGCAAATGAGATCATTGCACTAGGTAAAGAGGGGAAAATGATTGTTGAAGAAAACCGTG
CTTACCTTCCATCACTCTATTTTGCTGAACAGGGATTGGTGAAAAATATTAATAAGATCCTTGATCAAACAGAATACGAG
GATTTATTTCCTGAATCTGAATTTTTATTATCTCTGGGGAACCTCGAGGAAAGAATGAATGTGCAGTATGCACCAACACA
AAAAGATGCTATTCAGAAGGCGCTAATGTCACCAATGTTACTACTAACTGGAGGCCCTGGTACAGGAAAAACAACCGTTA
TAAAAGGGATTGTAGAATTGTATTCAGATTTACATGGATGTTCTCTTGATCCTAAAGATTACAAAAAGGAAGAGCCTTTT
CCAATTGTACTCGTAGCTCCAACAGGGAGAGCGGCAAAACGTATGAGTGAAGCCACAGGAATGCCGGCGGTCACGATTCA
CCGTCTTTTAAAATGGAATGGTGCGGATGGTTTTGAACACGATGAAGAAAACCCGATTGCAGGCAAACTTCTGATCATTG
ATGAGGTCTCAATGGTTGATATATGGATTGCCAACCAATTATTTAAAGCTTTGCCTAAAGAAATTCAGGTTATCATGGTA
GGCGATGAGGATCAGCTTCCTTCAGTTGGTCCTGGTCAAGTGCTTCGTGATTTATTGGCCTCTCAAGTGATACCAACGGT
TCGTCTGACAGATATTTACCGTCAGGCAGAGGGATCTTCTATTATTGAACTTGCCCACGATATAAAGGAAGGAAGACTTC
CACAAAATATTGCGGCACCAACTTCGGACCGTTCGTTTATTAGATGCTCACAAGTTCAGATGAAAGAAGTCATAGGTAAA
ATCATACAAAGTGCACTGAAAAAAGGATATACAGCGAGAGATATACAAATCCTGGCACCAATGTATAGAGGACCTGCTGG
TATTGATCAGCTAAATAAATTACTTCAAGAGCTTTTTAATCCAAAAGCATCTGGTAAAAGAGAATTGAAGTTCGGGGATG
TTGTGTACCGAAATGGTGATAAAGTACTGCAGCTCGTGAATCAGCCAGATAGCAACGTATTTAATGGAGATATTGGAGAG
ATTGTATCCATTTTTTATGCAAAAGAAAATACCGAAAAAGAAGATATGATCGTAGTTTCATTCGATGGTAATGAAGTAAC
GTATACGAAACAAGATTTTAATCAATTTACGCATGCCTTTTGTTGCTCCATTCATAAATCACAAGGAAGTGAGTTTCCAA
TTGTGATTATGCCTATTGTTAAAGGATACTATCGAATGCTAAGACGAAACTTAATTTATACAGCAGTAACAAGAAGTAAA
AAATCTCTTGTTTTATGTGGGGAGTTAGATGCTTTAGAGTGGGGCATTAAAAATAATGAAAGTTCCGAAAGACAAACAAG
CTTAATGTTAAAGCTTGGAGCGGATCAAATAAAAGATCTAGAACTTGATGAATTACAAAAACAATTGCCATTCCCTCTTG
AGGATGCAAATATTGGCATGGAAAACCTTACACCGTATGACTTTATGGAAGCTAGCGAAATATAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-661)

AAA domain (AAA_30)

(343-550)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(678-726)

Helix-hairpin-helix containing domain (HHH_RecD2)

(157-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

70.403

100

0.704

Multiple sequence alignment