Detailed information
Bioinformatically predicted
Overview
| Name | comF | Type | Machinery gene |
| Locus tag | D9O39_RS09385 | Genome accession | NZ_CP033039 |
| Coordinates | 1910811..1911464 (+) | Length | 217 a.a. |
| NCBI ID | WP_004918078.1 | Uniprot ID | A0AAP6LJM8 |
| Organism | Riemerella anatipestifer strain WH9 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1905811..1916464
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D9O39_RS09360 (D9O39_09410) | gdhA | 1906852..1908210 (+) | 1359 | WP_049334426.1 | NADP-specific glutamate dehydrogenase | - |
| D9O39_RS09365 (D9O39_09415) | - | 1908429..1909310 (+) | 882 | Protein_1833 | IS982-like element ISRa1 family transposase | - |
| D9O39_RS09370 (D9O39_09420) | - | 1909332..1909982 (+) | 651 | WP_154212730.1 | HD domain-containing protein | - |
| D9O39_RS09375 (D9O39_09425) | - | 1910037..1910588 (+) | 552 | WP_064971215.1 | hypothetical protein | - |
| D9O39_RS09385 (D9O39_09435) | comF | 1910811..1911464 (+) | 654 | WP_004918078.1 | ComF family protein | Machinery gene |
| D9O39_RS09390 | - | 1911552..1911692 (-) | 141 | WP_015345427.1 | hypothetical protein | - |
| D9O39_RS09395 (D9O39_09440) | - | 1911774..1912748 (+) | 975 | WP_064971216.1 | ribonucleotide-diphosphate reductase subunit beta | - |
| D9O39_RS09400 (D9O39_09445) | - | 1912796..1914451 (+) | 1656 | WP_064971217.1 | ribonucleoside-diphosphate reductase subunit alpha | - |
| D9O39_RS09405 (D9O39_09450) | - | 1914563..1915645 (+) | 1083 | WP_064971218.1 | serine hydrolase | - |
Sequence
Protein
Download Length: 217 a.a. Molecular weight: 25339.46 Da Isoelectric Point: 9.4150
>NTDB_id=320575 D9O39_RS09385 WP_004918078.1 1910811..1911464(+) (comF) [Riemerella anatipestifer strain WH9]
MFLDFFLPNRCLKCNLIISSDEIVCWACKSHINFTYNDFGGKGDFYQKVVLKFPVNKAFSLMKYEKKELSQDIIHALKYH
SMERVGKVLAHWVSENMDLSHQGIDILTNIPLHPKKQRERGYNQLHLFTKTLSQLQRIPYSHYLLKRNFYSKPQALKQKL
DREKMQNIFSVDEKIEGKHILLIDDVYTTGNTMSKAVWELLKGNGNQVSVLVLAIDE
MFLDFFLPNRCLKCNLIISSDEIVCWACKSHINFTYNDFGGKGDFYQKVVLKFPVNKAFSLMKYEKKELSQDIIHALKYH
SMERVGKVLAHWVSENMDLSHQGIDILTNIPLHPKKQRERGYNQLHLFTKTLSQLQRIPYSHYLLKRNFYSKPQALKQKL
DREKMQNIFSVDEKIEGKHILLIDDVYTTGNTMSKAVWELLKGNGNQVSVLVLAIDE
Nucleotide
Download Length: 654 bp
>NTDB_id=320575 D9O39_RS09385 WP_004918078.1 1910811..1911464(+) (comF) [Riemerella anatipestifer strain WH9]
ATGTTTTTAGATTTTTTTCTGCCCAATAGATGCCTAAAGTGTAATCTCATTATTTCCTCTGATGAAATCGTTTGCTGGGC
GTGTAAGTCTCATATCAATTTTACCTACAATGATTTTGGAGGAAAAGGGGATTTTTATCAAAAAGTTGTTCTTAAATTTC
CAGTAAATAAGGCTTTTAGTTTGATGAAGTACGAGAAAAAAGAACTTTCTCAAGATATTATACACGCCTTAAAGTACCAT
TCTATGGAGCGTGTGGGTAAGGTGTTAGCTCATTGGGTTTCTGAAAATATGGATTTATCTCATCAAGGGATAGATATATT
AACTAATATTCCACTTCATCCTAAAAAACAAAGAGAGAGAGGGTATAATCAGTTGCATTTATTTACAAAAACATTATCTC
AGTTGCAGAGGATACCTTATTCTCATTATCTTCTTAAAAGAAATTTCTATTCTAAGCCTCAAGCCTTAAAGCAAAAATTG
GATAGAGAAAAGATGCAAAATATATTTTCTGTAGATGAGAAAATAGAAGGTAAACACATCTTACTTATAGACGATGTATA
TACCACAGGAAATACAATGAGTAAAGCGGTTTGGGAGCTTTTAAAAGGAAATGGGAATCAGGTGAGTGTTTTGGTTTTGG
CAATAGATGAATAA
ATGTTTTTAGATTTTTTTCTGCCCAATAGATGCCTAAAGTGTAATCTCATTATTTCCTCTGATGAAATCGTTTGCTGGGC
GTGTAAGTCTCATATCAATTTTACCTACAATGATTTTGGAGGAAAAGGGGATTTTTATCAAAAAGTTGTTCTTAAATTTC
CAGTAAATAAGGCTTTTAGTTTGATGAAGTACGAGAAAAAAGAACTTTCTCAAGATATTATACACGCCTTAAAGTACCAT
TCTATGGAGCGTGTGGGTAAGGTGTTAGCTCATTGGGTTTCTGAAAATATGGATTTATCTCATCAAGGGATAGATATATT
AACTAATATTCCACTTCATCCTAAAAAACAAAGAGAGAGAGGGTATAATCAGTTGCATTTATTTACAAAAACATTATCTC
AGTTGCAGAGGATACCTTATTCTCATTATCTTCTTAAAAGAAATTTCTATTCTAAGCCTCAAGCCTTAAAGCAAAAATTG
GATAGAGAAAAGATGCAAAATATATTTTCTGTAGATGAGAAAATAGAAGGTAAACACATCTTACTTATAGACGATGTATA
TACCACAGGAAATACAATGAGTAAAGCGGTTTGGGAGCTTTTAAAAGGAAATGGGAATCAGGTGAGTGTTTTGGTTTTGG
CAATAGATGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comF | Riemerella anatipestifer ATCC 11845 = DSM 15868 |
100 |
100 |
1 |