Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   D9V81_RS01915 Genome accession   NZ_CP032996
Coordinates   381418..381915 (-) Length   165 a.a.
NCBI ID   WP_158349644.1    Uniprot ID   A0A4D6YGI0
Organism   Buchnera aphidicola (Therioaphis trifolii) strain Tma     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 376418..386915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9V81_RS01885 (D9V81_01880) aroB 376761..377852 (-) 1092 WP_158349634.1 3-dehydroquinate synthase -
  D9V81_RS01890 (D9V81_01885) aroK 377884..378405 (-) 522 WP_158349636.1 shikimate kinase AroK -
  D9V81_RS01900 (D9V81_01895) deoD 378711..379418 (-) 708 WP_158349638.1 purine-nucleoside phosphorylase -
  D9V81_RS01905 (D9V81_01900) - 379451..380674 (-) 1224 WP_158349640.1 phosphopentomutase -
  D9V81_RS01910 (D9V81_01905) - 380722..381318 (-) 597 WP_158349642.1 NifU family protein -
  D9V81_RS01915 (D9V81_01910) ssb 381418..381915 (-) 498 WP_158349644.1 single-stranded DNA-binding protein Machinery gene
  D9V81_RS01920 (D9V81_01915) dnaB 382123..383478 (+) 1356 WP_158349646.1 replicative DNA helicase -
  D9V81_RS01925 (D9V81_01920) - 383643..384206 (+) 564 WP_158349737.1 YqgE/AlgH family protein -
  D9V81_RS01930 (D9V81_01925) ruvX 384210..384614 (+) 405 WP_158349648.1 Holliday junction resolvase RuvX -
  D9V81_RS01935 (D9V81_01930) hemW 384646..385788 (+) 1143 WP_158349650.1 radical SAM family heme chaperone HemW -
  D9V81_RS01940 (D9V81_01935) trmB 385808..386548 (-) 741 WP_158349652.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19052.75 Da        Isoelectric Point: 9.9296

>NTDB_id=320476 D9V81_RS01915 WP_158349644.1 381418..381915(-) (ssb) [Buchnera aphidicola (Therioaphis trifolii) strain Tma]
MVRGINKVILIGNLGKNPEIRYMSNGNAVVNITLATSENWKDKKTNLTKEKTEWHRIVLFGKLAEIANEYLKKGSQVYIE
GSLQTRKWTDQNGFTRYTTEVIVNMNGKMQMLGTRILNKKNNDTNINNSKDINNIKKKDNIDNNLKNKLLEDDMSNIEFD
EELPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=320476 D9V81_RS01915 WP_158349644.1 381418..381915(-) (ssb) [Buchnera aphidicola (Therioaphis trifolii) strain Tma]
ATGGTACGAGGTATAAATAAAGTTATTTTAATTGGTAATTTAGGTAAAAATCCTGAAATACGATATATGTCAAATGGTAA
TGCAGTAGTGAATATTACTTTAGCAACATCAGAAAATTGGAAAGATAAAAAAACAAATTTAACAAAAGAAAAAACTGAAT
GGCATAGGATTGTATTATTTGGTAAATTAGCTGAAATTGCTAATGAATATTTAAAAAAAGGATCTCAAGTATATATTGAA
GGTTCTTTACAAACTCGAAAATGGACTGATCAAAATGGTTTTACTCGTTATACTACGGAAGTTATAGTTAATATGAATGG
TAAAATGCAAATGTTAGGAACACGTATATTAAATAAAAAAAATAATGATACTAATATCAATAATTCTAAAGATATTAATA
ATATTAAAAAAAAAGATAATATTGATAATAATTTAAAAAATAAGTTATTAGAAGATGATATGTCAAATATAGAATTTGAT
GAAGAATTACCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4D6YGI0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50

100

0.527
  ssb Glaesserella parasuis strain SC1401

41.436

100

0.455

Multiple sequence alignment