Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   FD491_RS03755 Genome accession   NZ_CP040230
Coordinates   763930..764703 (-) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain GD1108     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 758930..769703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FD491_RS03720 (FD491_06165) - 759183..759953 (-) 771 WP_000473705.1 isoprenyl transferase -
  FD491_RS03725 (FD491_06160) frr 760326..760880 (-) 555 WP_001280006.1 ribosome recycling factor -
  FD491_RS03730 (FD491_06155) pyrH 760899..761621 (-) 723 WP_000057330.1 UMP kinase -
  FD491_RS03735 (FD491_06150) tsf 761758..762639 (-) 882 WP_000201387.1 translation elongation factor Ts -
  FD491_RS03740 (FD491_06145) - 762674..762787 (-) 114 WP_001789890.1 hypothetical protein -
  FD491_RS03745 (FD491_06140) rpsB 762821..763588 (-) 768 WP_000268484.1 30S ribosomal protein S2 -
  FD491_RS03750 (FD491_06135) - 763787..763879 (-) 93 WP_001790530.1 hypothetical protein -
  FD491_RS03755 (FD491_06130) codY 763930..764703 (-) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  FD491_RS03760 (FD491_06125) hslU 764728..766131 (-) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  FD491_RS03765 (FD491_06120) hslV 766197..766742 (-) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  FD491_RS03770 (FD491_06115) xerC 766739..767635 (-) 897 WP_001015606.1 tyrosine recombinase XerC -
  FD491_RS03775 (FD491_06110) trmFO 768052..769359 (-) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=320394 FD491_RS03755 WP_000055337.1 763930..764703(-) (codY) [Staphylococcus aureus strain GD1108]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=320394 FD491_RS03755 WP_000055337.1 763930..764703(-) (codY) [Staphylococcus aureus strain GD1108]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGTCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTTATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAG

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428