Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   D4G81_RS01010 Genome accession   NZ_CP032913
Coordinates   211781..212062 (+) Length   93 a.a.
NCBI ID   WP_001272690.1    Uniprot ID   -
Organism   Helicobacter pylori strain 5-A-EK1     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 206781..217062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4G81_RS00985 groES 207349..207705 (-) 357 WP_000671934.1 co-chaperone GroES -
  D4G81_RS00995 dnaG 207992..209671 (+) 1680 WP_139523914.1 DNA primase -
  D4G81_RS01000 - 209668..210720 (+) 1053 WP_139523915.1 MnmA/TRMU family protein -
  D4G81_RS01005 - 210809..211636 (+) 828 WP_139523916.1 DUF5718 family protein -
  D4G81_RS01010 comB2 211781..212062 (+) 282 WP_001272690.1 TrbC/VirB2 family protein Machinery gene
  D4G81_RS01015 comB3 212062..212325 (+) 264 WP_000584956.1 hypothetical protein Machinery gene
  D4G81_RS01020 comB4 212327..214690 (+) 2364 WP_139523917.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  D4G81_RS01030 - 214992..216332 (+) 1341 WP_201737685.1 COG3014 family protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10525.78 Da        Isoelectric Point: 9.1450

>NTDB_id=320347 D4G81_RS01010 WP_001272690.1 211781..212062(+) (comB2) [Helicobacter pylori strain 5-A-EK1]
MSAHFLKIVFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=320347 D4G81_RS01010 WP_001272690.1 211781..212062(+) (comB2) [Helicobacter pylori strain 5-A-EK1]
ATGTCCGCTCATTTTTTAAAAATCGTTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATTCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAGGCCCCGAGTTTAGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(7-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

100

100

1

Multiple sequence alignment