Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   D4H18_RS07525 Genome accession   NZ_CP032912
Coordinates   1523629..1523892 (-) Length   87 a.a.
NCBI ID   WP_000584956.1    Uniprot ID   -
Organism   Helicobacter pylori strain 13-A-EK8     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1518629..1528892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4H18_RS07510 - 1519602..1520942 (-) 1341 WP_201737551.1 hypothetical protein -
  D4H18_RS07520 comB4 1521264..1523627 (-) 2364 WP_139523303.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  D4H18_RS07525 comB3 1523629..1523892 (-) 264 WP_000584956.1 hypothetical protein Machinery gene
  D4H18_RS07530 comB2 1523892..1524173 (-) 282 WP_001279601.1 TrbC/VirB2 family protein Machinery gene
  D4H18_RS07535 - 1524319..1525146 (-) 828 WP_139523304.1 DUF5718 family protein -
  D4H18_RS07540 - 1525238..1526290 (-) 1053 WP_139523306.1 MnmA/TRMU family protein -
  D4H18_RS07545 dnaG 1526287..1527966 (-) 1680 WP_139523308.1 DNA primase -
  D4H18_RS07555 groES 1528252..1528608 (+) 357 WP_000671934.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10006.08 Da        Isoelectric Point: 9.5290

>NTDB_id=320343 D4H18_RS07525 WP_000584956.1 1523629..1523892(-) (comB3) [Helicobacter pylori strain 13-A-EK8]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIVAKSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=320343 D4H18_RS07525 WP_000584956.1 1523629..1523892(-) (comB3) [Helicobacter pylori strain 13-A-EK8]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATCTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGACATTGCAGATATTATTGTGGCTAAAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

100

100

1

Multiple sequence alignment