Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   D4H43_RS07815 Genome accession   NZ_CP032911
Coordinates   1609391..1609672 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain 19-A-EK3     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1604391..1614672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4H43_RS07795 - 1605116..1606456 (-) 1341 WP_201737096.1 hypothetical protein -
  D4H43_RS07805 comB4 1606763..1609126 (-) 2364 WP_139544559.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  D4H43_RS07810 comB3 1609128..1609391 (-) 264 WP_000584956.1 hypothetical protein Machinery gene
  D4H43_RS07815 comB2 1609391..1609672 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  D4H43_RS07820 - 1609818..1610645 (-) 828 WP_001920389.1 DUF5718 family protein -
  D4H43_RS07825 - 1610738..1611790 (-) 1053 WP_139544560.1 MnmA/TRMU family protein -
  D4H43_RS07830 dnaG 1611787..1613466 (-) 1680 WP_139544561.1 DNA primase -
  D4H43_RS07840 groES 1613755..1614111 (+) 357 WP_139544562.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=320324 D4H43_RS07815 WP_001272686.1 1609391..1609672(-) (comB2) [Helicobacter pylori strain 19-A-EK3]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=320324 D4H43_RS07815 WP_001272686.1 1609391..1609672(-) (comB2) [Helicobacter pylori strain 19-A-EK3]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTGGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAAGGGTT
TTTTAACGCCCTAGAAGCCCAGCTTAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGTGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTGGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989

Multiple sequence alignment