Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   D4H43_RS06610 Genome accession   NZ_CP032911
Coordinates   1366549..1366812 (-) Length   87 a.a.
NCBI ID   WP_128036898.1    Uniprot ID   A0AB37V0S2
Organism   Helicobacter pylori strain 19-A-EK3     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1361549..1371812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4H43_RS06590 - 1362427..1363596 (-) 1170 WP_139544418.1 VirB8/TrbF family protein -
  D4H43_RS06595 - 1363589..1363723 (-) 135 WP_000738749.1 hypothetical protein -
  D4H43_RS06600 - 1363720..1366302 (-) 2583 WP_139544419.1 VirB4 family type IV secretion/conjugal transfer ATPase -
  D4H43_RS06605 - 1366302..1366538 (-) 237 WP_139544420.1 hypothetical protein -
  D4H43_RS06610 comB3 1366549..1366812 (-) 264 WP_128036898.1 competence protein ComB Machinery gene
  D4H43_RS06615 comB2 1366824..1367108 (-) 285 WP_000736106.1 TrbC/VirB2 family protein Machinery gene
  D4H43_RS06620 - 1367105..1367584 (-) 480 WP_033749032.1 hypothetical protein -
  D4H43_RS06625 - 1367577..1367807 (-) 231 WP_000189076.1 hypothetical protein -
  D4H43_RS06630 - 1367810..1368598 (-) 789 WP_139544421.1 integrase -
  D4H43_RS06635 - 1368734..1369117 (+) 384 WP_120957918.1 hypothetical protein -
  D4H43_RS08390 - 1369509..1369676 (-) 168 WP_201737091.1 hypothetical protein -
  D4H43_RS06640 - 1369740..1370042 (-) 303 WP_139544422.1 hypothetical protein -
  D4H43_RS06645 - 1370062..1371054 (-) 993 WP_108169690.1 ketoacyl-ACP synthase III -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10018.89 Da        Isoelectric Point: 5.7206

>NTDB_id=320312 D4H43_RS06610 WP_128036898.1 1366549..1366812(-) (comB3) [Helicobacter pylori strain 19-A-EK3]
MQLVGISVSNLKEISSKEKFLWLNAKSFLLSGFIPFVMIPWLDFLNSLMLYVCFLLVFSIAEFFDEDISDILIAHSKIKT
KTNSFYA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=320312 D4H43_RS06610 WP_128036898.1 1366549..1366812(-) (comB3) [Helicobacter pylori strain 19-A-EK3]
ATGCAATTAGTTGGTATTTCAGTTTCTAATCTCAAAGAAATCAGCTCCAAAGAAAAATTTCTTTGGCTCAATGCTAAGAG
CTTTTTACTCTCAGGATTTATTCCTTTTGTAATGATACCTTGGCTAGATTTTTTAAATTCTTTAATGCTGTATGTGTGCT
TTTTATTGGTTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGCGACATTTTAATCGCCCATTCTAAAATTAAAACC
AAAACTAATTCATTTTATGCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

59.77

100

0.598

Multiple sequence alignment