Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   D4I92_RS07110 Genome accession   NZ_CP032906
Coordinates   1446254..1446517 (-) Length   87 a.a.
NCBI ID   WP_000584956.1    Uniprot ID   -
Organism   Helicobacter pylori strain 25-A-EK1     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1441254..1451517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4I92_RS07095 - 1442247..1443587 (-) 1341 WP_201736749.1 COG3014 family protein -
  D4I92_RS07105 comB4 1443889..1446252 (-) 2364 WP_139519886.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  D4I92_RS07110 comB3 1446254..1446517 (-) 264 WP_000584956.1 hypothetical protein Machinery gene
  D4I92_RS07115 comB2 1446517..1446798 (-) 282 WP_001272690.1 TrbC/VirB2 family protein Machinery gene
  D4I92_RS07120 - 1446944..1447771 (-) 828 WP_139519888.1 DUF5718 family protein -
  D4I92_RS07125 - 1447860..1448912 (-) 1053 WP_139519889.1 MnmA/TRMU family protein -
  D4I92_RS07130 dnaG 1448909..1450588 (-) 1680 WP_139519891.1 DNA primase -
  D4I92_RS07140 groES 1450876..1451232 (+) 357 WP_000671920.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10006.08 Da        Isoelectric Point: 9.5290

>NTDB_id=320219 D4I92_RS07110 WP_000584956.1 1446254..1446517(-) (comB3) [Helicobacter pylori strain 25-A-EK1]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIVAKSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=320219 D4I92_RS07110 WP_000584956.1 1446254..1446517(-) (comB3) [Helicobacter pylori strain 25-A-EK1]
ATGATTATCCTCTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTGTGGCTAAAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

100

100

1

Multiple sequence alignment