Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   D4J22_RS05590 Genome accession   NZ_CP032905
Coordinates   1129078..1129362 (-) Length   94 a.a.
NCBI ID   WP_139547350.1    Uniprot ID   -
Organism   Helicobacter pylori strain 26-A-EK1     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1124078..1134362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4J22_RS05565 - 1125370..1125846 (-) 477 Protein_1060 hypothetical protein -
  D4J22_RS08535 - 1125839..1125979 (-) 141 WP_033590254.1 hypothetical protein -
  D4J22_RS05575 - 1125976..1128552 (-) 2577 WP_139547348.1 VirB4 family type IV secretion/conjugal transfer ATPase -
  D4J22_RS05580 - 1128552..1128791 (-) 240 WP_139547349.1 hypothetical protein -
  D4J22_RS05585 comB3 1128803..1129066 (-) 264 WP_001177716.1 hypothetical protein Machinery gene
  D4J22_RS05590 comB2 1129078..1129362 (-) 285 WP_139547350.1 TrbC/VirB2 family protein Machinery gene
  D4J22_RS05595 - 1129359..1129838 (-) 480 WP_000571134.1 hypothetical protein -
  D4J22_RS05600 - 1129831..1130061 (-) 231 WP_139547351.1 DNA polymerase III subunit chi -
  D4J22_RS05605 - 1130064..1130852 (-) 789 WP_201736835.1 integrase -
  D4J22_RS05610 - 1130830..1131498 (-) 669 WP_201736836.1 AAA family ATPase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10726.03 Da        Isoelectric Point: 11.1589

>NTDB_id=320188 D4J22_RS05590 WP_139547350.1 1129078..1129362(-) (comB2) [Helicobacter pylori strain 26-A-EK1]
MKKLRHFRKLIAFLGFSPLSLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGAAIF
FKAPALANWFMSIF

Nucleotide


Download         Length: 285 bp        

>NTDB_id=320188 D4J22_RS05590 WP_139547350.1 1129078..1129362(-) (comB2) [Helicobacter pylori strain 26-A-EK1]
ATGAAAAAATTAAGGCATTTTAGAAAGCTTATCGCCTTTTTAGGTTTTTCACCTCTTTCACTACAAGCGGATATGACTAC
CTTTTTTAATTCCATTGAACAACAGCTCACTAGCCCTACGGCTAAAGGCATTTTAATGGTTATTTTTTTAGGACTTGCTA
TTTTTATATGGAAAAACTTAGATAGATGGAAAGAAATTTTAATGACCGTGCTTGCTATTGCAATTGGTGCTGCAATCTTT
TTTAAAGCCCCAGCCTTAGCTAACTGGTTTATGAGTATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(4-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

58.889

95.745

0.564

Multiple sequence alignment