Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   D4K20_RS07785 Genome accession   NZ_CP032903
Coordinates   1595781..1596044 (-) Length   87 a.a.
NCBI ID   WP_139545673.1    Uniprot ID   -
Organism   Helicobacter pylori strain 173-A-EK1     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1590781..1601044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4K20_RS07770 - 1591774..1593204 (-) 1431 WP_201737762.1 COG3014 family protein -
  D4K20_RS07780 comB4 1593416..1595779 (-) 2364 WP_139545672.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  D4K20_RS07785 comB3 1595781..1596044 (-) 264 WP_139545673.1 competence protein ComB Machinery gene
  D4K20_RS07790 comB2 1596044..1596325 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  D4K20_RS07795 - 1596470..1597297 (-) 828 WP_139545674.1 DUF5718 family protein -
  D4K20_RS07800 - 1597387..1598439 (-) 1053 WP_139545675.1 MnmA/TRMU family protein -
  D4K20_RS07805 dnaG 1598436..1600115 (-) 1680 WP_139545676.1 DNA primase -
  D4K20_RS07815 groES 1600402..1600758 (+) 357 WP_000671927.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10007.02 Da        Isoelectric Point: 7.9616

>NTDB_id=320157 D4K20_RS07785 WP_139545673.1 1595781..1596044(-) (comB3) [Helicobacter pylori strain 173-A-EK1]
MIILSASVENLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIVAKSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=320157 D4K20_RS07785 WP_139545673.1 1595781..1596044(-) (comB3) [Helicobacter pylori strain 173-A-EK1]
ATGATTATCCTGTCAGCGAGCGTGGAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATCTTGCTCCCTTGGATTGATTTATTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGACATTGCAGATATTATCGTGGCTAAAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

98.851

100

0.989

Multiple sequence alignment