Detailed information NTG0320150

Bioinformatically predicted

Overview

• Name: comB2
• Type: Machinery gene
• Locus tag: D4K20_RS07340
• Genome accession: NZ_CP032903
• Coordinates: 1501035..1501319 (-)
• Length: 94 a.a.
• NCBI ID: WP_000736106.1
• Uniprot ID: T0F3N0
• Organism: Helicobacter pylori strain 173-A-EK1
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1496035..1506319

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D4K20_RS07315	-	1496670..1497806 (-)	1137	WP_139545622.1	VirB8/TrbF family protein	-
D4K20_RS08545	-	1497799..1497939 (-)	141	WP_000789926.1	hypothetical protein	-
D4K20_RS07325	-	1497936..1500512 (-)	2577	WP_139545623.1	VirB4 family type IV secretion/conjugal transfer ATPase	-
D4K20_RS07330	-	1500512..1500748 (-)	237	WP_001168532.1	hypothetical protein	-
D4K20_RS07335	comB3	1500760..1501023 (-)	264	WP_001177716.1	hypothetical protein	Machinery gene
D4K20_RS07340	comB2	1501035..1501319 (-)	285	WP_000736106.1	TrbC/VirB2 family protein	Machinery gene
D4K20_RS07345	-	1501316..1501795 (-)	480	WP_201737757.1	hypothetical protein	-
D4K20_RS07350	-	1501899..1502687 (-)	789	WP_139545624.1	integrase	-
D4K20_RS07355	-	1502740..1503120 (-)	381	Protein_1404	hypothetical protein	-
D4K20_RS07360	-	1503120..1504505 (-)	1386	WP_139545626.1	hypothetical protein	-

Sequence

Protein

• Length: 94 a.a.
• Molecular weight: 10752.11 Da
• Isoelectric Point: 11.1589

>NTDB_id=320150 D4K20_RS07340 WP_000736106.1 1501035..1501319(-) (comB2) [Helicobacter pylori strain 173-A-EK1]
MKKLRHFRKLIAFLGFSPLLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGAAIF
FKAPALANWFMSIF

Nucleotide

• Length: 285 bp

>NTDB_id=320150 D4K20_RS07340 WP_000736106.1 1501035..1501319(-) (comB2) [Helicobacter pylori strain 173-A-EK1]
ATGAAAAAATTAAGGCATTTTAGAAAGCTTATCGCCTTTTTAGGTTTTTCACCTCTTTTATTACAAGCGGATATGACTAC
CTTTTTTAATTCCATTGAACAACAGCTCACTAGCCCTACGGCTAAAGGCATTTTAATGGTTATTTTTTTAGGACTTGCTA
TTTTTATATGGAAAAACTTAGATAGATGGAAAGAAATTTTAATGACCGTGCTTGCTATTGCAATTGGTGCTGCAATCTTT
TTTAAAGCCCCAGCCTTAGCTAACTGGTTTATGAGTATTTTTTAA

Domains

Predicted by InterProScan.

• TrbC/VIRB2 pilin (TrbC) (4-90)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB2	Helicobacter pylori 26695	57.778	95.745	0.553