Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   D4K40_RS07590 Genome accession   NZ_CP032902
Coordinates   1535957..1536238 (-) Length   93 a.a.
NCBI ID   WP_001272690.1    Uniprot ID   -
Organism   Helicobacter pylori strain 280-A-EK1     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1530957..1541238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4K40_RS07570 - 1531687..1533027 (-) 1341 WP_201737293.1 COG3014 family protein -
  D4K40_RS07580 comB4 1533329..1535692 (-) 2364 WP_139521167.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  D4K40_RS07585 comB3 1535694..1535957 (-) 264 WP_000584956.1 hypothetical protein Machinery gene
  D4K40_RS07590 comB2 1535957..1536238 (-) 282 WP_001272690.1 TrbC/VirB2 family protein Machinery gene
  D4K40_RS07595 - 1536383..1537210 (-) 828 WP_139521168.1 DUF5718 family protein -
  D4K40_RS07600 - 1537300..1538352 (-) 1053 WP_139521169.1 MnmA/TRMU family protein -
  D4K40_RS07605 dnaG 1538349..1540028 (-) 1680 WP_139521170.1 DNA primase -
  D4K40_RS07615 groES 1540303..1540659 (+) 357 WP_000671934.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10525.78 Da        Isoelectric Point: 9.1450

>NTDB_id=320135 D4K40_RS07590 WP_001272690.1 1535957..1536238(-) (comB2) [Helicobacter pylori strain 280-A-EK1]
MSAHFLKIVFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=320135 D4K40_RS07590 WP_001272690.1 1535957..1536238(-) (comB2) [Helicobacter pylori strain 280-A-EK1]
ATGTCCGCTCATTTTTTAAAAATCGTTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(7-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

100

100

1

Multiple sequence alignment