Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   D4K40_RS05375 Genome accession   NZ_CP032902
Coordinates   1085857..1086141 (-) Length   94 a.a.
NCBI ID   WP_139520890.1    Uniprot ID   -
Organism   Helicobacter pylori strain 280-A-EK1     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1080857..1091141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4K40_RS08280 - 1081448..1081609 (+) 162 Protein_1024 restriction endonuclease subunit S -
  D4K40_RS05350 - 1082152..1082628 (-) 477 Protein_1025 hypothetical protein -
  D4K40_RS08285 - 1082621..1082761 (-) 141 WP_097690785.1 type IV secretion system protein VirB7 -
  D4K40_RS05360 - 1082758..1085334 (-) 2577 Protein_1027 VirB4 family type IV secretion/conjugal transfer ATPase -
  D4K40_RS05365 - 1085334..1085570 (-) 237 WP_001168532.1 hypothetical protein -
  D4K40_RS05370 comB3 1085582..1085845 (-) 264 WP_001177716.1 hypothetical protein Machinery gene
  D4K40_RS05375 comB2 1085857..1086141 (-) 285 WP_139520890.1 TrbC/VirB2 family protein Machinery gene
  D4K40_RS05380 - 1086138..1086617 (-) 480 WP_139520891.1 hypothetical protein -
  D4K40_RS05385 - 1086610..1086840 (-) 231 WP_000189076.1 hypothetical protein -
  D4K40_RS05390 - 1086843..1087631 (-) 789 WP_201737276.1 integrase -
  D4K40_RS05395 - 1087609..1088277 (-) 669 WP_201737277.1 AAA family ATPase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10778.14 Da        Isoelectric Point: 10.9370

>NTDB_id=320123 D4K40_RS05375 WP_139520890.1 1085857..1086141(-) (comB2) [Helicobacter pylori strain 280-A-EK1]
MKKLRYFRKLIAFLGFSPLLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGAAIF
FKAPALANWFMSIF

Nucleotide


Download         Length: 285 bp        

>NTDB_id=320123 D4K40_RS05375 WP_139520890.1 1085857..1086141(-) (comB2) [Helicobacter pylori strain 280-A-EK1]
ATGAAAAAATTAAGGTATTTTAGAAAGCTTATCGCCTTTTTAGGTTTTTCACCTCTTTTATTACAAGCGGATATGACTAC
CTTTTTTAATTCCATTGAACAACAGCTCACTAGCCCTACGGCTAAAGGCATTTTAATGGTTATTTTTTTAGGACTTGCTA
TTTTTATATGGAAAAACTTAGATAGATGGAAAGAAATTTTAATGACCGTGCTTGCTATTGCAATTGGTGCTGCAATCTTT
TTTAAAGCCCCAGCCTTAGCTAACTGGTTTATGAGTATTTTTTAA

Domains

Predicted by InterProScan.

TrbC/VIRB2 pilin (TrbC)

(4-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

56.667

95.745

0.543

Multiple sequence alignment