Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   D4L20_RS01010 Genome accession   NZ_CP032899
Coordinates   208546..208827 (+) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain 478-A-EK1     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 203546..213827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4L20_RS00985 groES 204114..204470 (-) 357 WP_040157068.1 co-chaperone GroES -
  D4L20_RS00995 dnaG 204756..206435 (+) 1680 WP_139549212.1 DNA primase -
  D4L20_RS01000 - 206432..207484 (+) 1053 WP_139549213.1 MnmA/TRMU family protein -
  D4L20_RS01005 - 207574..208401 (+) 828 WP_042636802.1 DUF5718 family protein -
  D4L20_RS01010 comB2 208546..208827 (+) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  D4L20_RS01015 comB3 208827..209090 (+) 264 WP_000584956.1 hypothetical protein Machinery gene
  D4L20_RS01020 comB4 209092..211455 (+) 2364 WP_139549214.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  D4L20_RS01030 - 211755..213095 (+) 1341 WP_180339067.1 COG3014 family protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=320054 D4L20_RS01010 WP_001272686.1 208546..208827(+) (comB2) [Helicobacter pylori strain 478-A-EK1]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=320054 D4L20_RS01010 WP_001272686.1 208546..208827(+) (comB2) [Helicobacter pylori strain 478-A-EK1]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAAGGGTT
TTTTAATGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATTCTTGGTGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989

Multiple sequence alignment