Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   D4L56_RS07345 Genome accession   NZ_CP032898
Coordinates   1506853..1507116 (-) Length   87 a.a.
NCBI ID   WP_000584973.1    Uniprot ID   G2MDJ4
Organism   Helicobacter pylori strain 479-C-EK2     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1501853..1512116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4L56_RS07330 - 1502827..1504167 (-) 1341 WP_180339199.1 COG3014 family protein -
  D4L56_RS07340 comB4 1504488..1506851 (-) 2364 WP_139518926.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  D4L56_RS07345 comB3 1506853..1507116 (-) 264 WP_000584973.1 hypothetical protein Machinery gene
  D4L56_RS07350 comB2 1507116..1507397 (-) 282 WP_001272690.1 TrbC/VirB2 family protein Machinery gene
  D4L56_RS07355 - 1507544..1508371 (-) 828 WP_139518927.1 DUF5718 family protein -
  D4L56_RS07360 - 1508461..1509513 (-) 1053 WP_139518928.1 MnmA/TRMU family protein -
  D4L56_RS07365 dnaG 1509510..1511189 (-) 1680 WP_139518929.1 DNA primase -
  D4L56_RS07375 groES 1511463..1511819 (+) 357 WP_000671934.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10034.13 Da        Isoelectric Point: 9.5290

>NTDB_id=320047 D4L56_RS07345 WP_000584973.1 1506853..1507116(-) (comB3) [Helicobacter pylori strain 479-C-EK2]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFVPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIVAKSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=320047 D4L56_RS07345 WP_000584973.1 1506853..1507116(-) (comB3) [Helicobacter pylori strain 479-C-EK2]
ATGATTATCCTCTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGTGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTGTGGCTAAAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

98.851

100

0.989

Multiple sequence alignment