Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   FDV79_RS01975 Genome accession   NZ_CP040103
Coordinates   419679..420404 (-) Length   241 a.a.
NCBI ID   WP_140380789.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain LVP66     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 414679..425404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDV79_RS01950 (FDV79_02145) - 415798..416289 (+) 492 WP_005458943.1 type II secretion system protein M -
  FDV79_RS01955 (FDV79_02150) - 416291..417052 (+) 762 WP_020904372.1 type II secretion system protein N -
  FDV79_RS01960 (FDV79_02155) cysQ 417339..418166 (-) 828 WP_005458987.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  FDV79_RS01965 (FDV79_02160) nudE 418207..418776 (-) 570 WP_005459019.1 ADP compounds hydrolase NudE -
  FDV79_RS01970 (FDV79_02165) nfuA 418997..419581 (-) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  FDV79_RS01975 (FDV79_02170) comF 419679..420404 (-) 726 WP_140380789.1 ComF family protein Machinery gene
  FDV79_RS01980 (FDV79_02175) bioH 420489..421256 (+) 768 WP_178978871.1 pimeloyl-ACP methyl ester esterase BioH -
  FDV79_RS01985 (FDV79_02180) - 421380..421844 (+) 465 WP_005459035.1 hypothetical protein -
  FDV79_RS01990 (FDV79_02185) - 421978..424299 (-) 2322 WP_029855941.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27736.00 Da        Isoelectric Point: 8.9991

>NTDB_id=319857 FDV79_RS01975 WP_140380789.1 419679..420404(-) (comF) [Vibrio parahaemolyticus strain LVP66]
MLSHHWQNIMHRMLSSQCGLCRFPILAAAQPNALRWCDHCYQYLTPVKRCQRCGLSLKAEEANIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQRFKDHGQIWHVRALTQLLAQRISTPAPLITTVPLHWQRYLYRGFNQSDILARHLAGHLNVRFDN
HVFRRVKHVQSQRGYKKSSREQNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=319857 FDV79_RS01975 WP_140380789.1 419679..420404(-) (comF) [Vibrio parahaemolyticus strain LVP66]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTATGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCTGGC
TGCCGCTCAACCCAATGCGCTGCGTTGGTGTGATCACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGCTGTG
GATTGAGCTTAAAAGCTGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCCCCTTGGCAACGG
CTATTTACCTTGGGAGACTACGATTTTCCGCTGTCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAATATGGCATGT
TCGCGCTTTAACGCAATTGCTTGCCCAGCGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTACTTGTATCGAGGCTTTAATCAGAGCGACATACTGGCGCGACATTTGGCTGGTCACCTTAATGTGAGGTTTGATAAT
CACGTATTTCGCCGCGTAAAACACGTCCAGTCGCAGCGTGGGTACAAGAAATCCAGCCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATCGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGCT
GTCTAG

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(146-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

72.199

100

0.722
  comF Vibrio cholerae strain A1552

49.16

98.755

0.485

Multiple sequence alignment