Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   D9C18_RS01155 Genome accession   NZ_CP032865
Coordinates   200999..201778 (-) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis subsp. subtilis strain N3-1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 195999..206778
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C18_RS01125 (D9C18_01125) fliH 196030..196782 (-) 753 WP_014479782.1 flagellar assembly protein FliH -
  D9C18_RS01130 (D9C18_01130) fliG 196775..197791 (-) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  D9C18_RS01135 (D9C18_01135) fliF 197804..199401 (-) 1598 Protein_226 flagellar basal-body MS-ring/collar protein FliF -
  D9C18_RS01140 (D9C18_01140) fliE 199447..199767 (-) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  D9C18_RS01145 (D9C18_01145) flgC 199778..200230 (-) 453 WP_014479779.1 flagellar basal body rod protein FlgC -
  D9C18_RS01150 (D9C18_01150) flgB 200230..200619 (-) 390 WP_014479778.1 flagellar basal body rod protein FlgB -
  D9C18_RS01155 (D9C18_01155) codY 200999..201778 (-) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  D9C18_RS01160 (D9C18_01160) hslU 201818..203221 (-) 1404 WP_014476801.1 HslU--HslV peptidase ATPase subunit -
  D9C18_RS01165 (D9C18_01165) clpQ 203238..203783 (-) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  D9C18_RS01170 (D9C18_01170) xerC 203796..204710 (-) 915 WP_014479777.1 tyrosine recombinase XerC -
  D9C18_RS01175 (D9C18_01175) trmFO 204778..206085 (-) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=319689 D9C18_RS01155 WP_003220850.1 200999..201778(-) (codY) [Bacillus subtilis subsp. subtilis strain N3-1]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=319689 D9C18_RS01155 WP_003220850.1 200999..201778(-) (codY) [Bacillus subtilis subsp. subtilis strain N3-1]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCTTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment