Detailed information NTG0319683

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: D9C17_RS21345
• Genome accession: NZ_CP032863
• Coordinates: 3974772..3975551 (+)
• Length: 259 a.a.
• NCBI ID: WP_003220850.1
• Uniprot ID: G4NSM6
• Organism: Bacillus subtilis subsp. subtilis strain N2-2
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 3969772..3980551

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D9C17_RS21325 (D9C17_21325)	trmFO	3970465..3971772 (+)	1308	WP_003244725.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
D9C17_RS21330 (D9C17_21330)	xerC	3971840..3972754 (+)	915	WP_014479777.1	tyrosine recombinase XerC	-
D9C17_RS21335 (D9C17_21335)	clpQ	3972767..3973312 (+)	546	WP_003238555.1	ATP-dependent protease subunit ClpQ	-
D9C17_RS21340 (D9C17_21340)	hslU	3973329..3974732 (+)	1404	WP_014476801.1	HslU--HslV peptidase ATPase subunit	-
D9C17_RS21345 (D9C17_21345)	codY	3974772..3975551 (+)	780	WP_003220850.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
D9C17_RS21350 (D9C17_21350)	flgB	3975931..3976320 (+)	390	WP_014479778.1	flagellar basal body rod protein FlgB	-
D9C17_RS21355 (D9C17_21355)	flgC	3976320..3976772 (+)	453	WP_014479779.1	flagellar basal body rod protein FlgC	-
D9C17_RS21360 (D9C17_21360)	fliE	3976783..3977103 (+)	321	WP_003238544.1	flagellar hook-basal body complex protein FliE	-
D9C17_RS21365 (D9C17_21365)	fliF	3977149..3978746 (+)	1598	Protein_4128	flagellar basal-body MS-ring/collar protein FliF	-
D9C17_RS21370 (D9C17_21370)	fliG	3978759..3979775 (+)	1017	WP_003231981.1	flagellar motor switch protein FliG	-
D9C17_RS21375 (D9C17_21375)	fliH	3979768..3980520 (+)	753	WP_014479782.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29013.22 Da
• Isoelectric Point: 4.6514

>NTDB_id=319683 D9C17_RS21345 WP_003220850.1 3974772..3975551(+) (codY) [Bacillus subtilis subsp. subtilis strain N2-2]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=319683 D9C17_RS21345 WP_003220850.1 3974772..3975551(+) (codY) [Bacillus subtilis subsp. subtilis strain N2-2]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCTTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

• CodY GAF-like domain (CodY) (3-178)

3D structure

• AlphaFold DB: G4NSM6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	100	100	1
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.451	98.456	0.467