Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   LMHCC_RS05460 Genome accession   NC_011660
Coordinates   1098298..1100694 (+) Length   798 a.a.
NCBI ID   WP_012581289.1    Uniprot ID   A0A0E0UX87
Organism   Listeria monocytogenes HCC23     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1093298..1105694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMHCC_RS05440 (LMHCC_1056) - 1094451..1095599 (+) 1149 WP_012581286.1 cysteine desulfurase family protein -
  LMHCC_RS05445 (LMHCC_1057) mnmA 1095618..1096733 (+) 1116 WP_012581287.1 tRNA 2-thiouridine(34) synthase MnmA -
  LMHCC_RS05450 (LMHCC_1058) - 1096851..1097591 (+) 741 WP_012581288.1 alpha/beta hydrolase -
  LMHCC_RS05455 (LMHCC_1059) - 1097632..1098270 (+) 639 WP_077904947.1 tetratricopeptide repeat protein -
  LMHCC_RS05460 (LMHCC_1060) recD2 1098298..1100694 (+) 2397 WP_012581289.1 ATP-dependent RecD-like DNA helicase Machinery gene
  LMHCC_RS05465 (LMHCC_1061) pieS 1100734..1102173 (-) 1440 WP_014589074.1 two component system sensor histidine kinase PieS -
  LMHCC_RS05470 (LMHCC_1062) pieR 1102170..1102856 (-) 687 WP_003730152.1 two component system response regulator PieR -
  LMHCC_RS05475 (LMHCC_1063) - 1103023..1104528 (+) 1506 WP_003730151.1 ABC transporter permease -
  LMHCC_RS05480 (LMHCC_1064) - 1104537..1105232 (+) 696 WP_003725979.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 90071.16 Da        Isoelectric Point: 4.8404

>NTDB_id=31968 LMHCC_RS05460 WP_012581289.1 1098298..1100694(+) (recD2) [Listeria monocytogenes HCC23]
MAEQESLALFNDTPEELFMKGTMLSTIFYNAENLFSVVRILVKETNADWDEKDIIVTGFFPALHEQEVYTFYGKMQEHAK
FGQQFKADRFRKEMPQSRAGLISYLSGELFKGIGKVTAENIVDTIGDDAITKILSDPSLLNTVPKLPSGAAESLLASLRE
NQGLEHVMVGLNEYGFGPQLSMKIFQAYKQNAIEVLENNPYKLIEDVKGIGFHRADELGRKLGLGGNHPERLRAGILFML
DSVCMQQGHVYMEQEVLLGEVTYLLEESEGIRIDQNILVAQVEKLAEEQKIITENTRVYMPSLYYSESGFAYHVKRMLKQ
TEYQEQFPQSEFLLALGELEERIGVHYGDSQRQALEQALMSPMLVLTGGPGTGKTTVIKGIVELYAELNGVSLDPHAYKD
GATFPVLLAAPTGRAAKRMSESTGLPAMTIHRLLGMNGQEQMDDDAERLIDGRLLIVDEMSMVDIWLANQLFRALPAHMQ
VVLVGDQDQLPSVGPGQVLKDILQSEQIPTVALSDIYRQKDGSSIIEMAHYIKEGMLPADFTKNSADRSFFHCTVNQIGD
VVEQVVKNAKNKGFRAKDIQVLAPMYRGPAGIDVLNKKLQEIFNPNDTGRRKEVQFGEIKYRVHDKVLQLINQPEKNVFN
GDIGEIVSIIYAKENTEKQDLIVVQFDQTEVSYYRQEFNQLTHAYCCSIHKAQGSEFPIVIMPIVRSYYRMLRRDLLYTG
VTRSKQFLILCGEEEAFRMGIERIDENKRNTTLSERLMSEDVLLEQMTNKRILTAENITEIDPMIGMEGITPEQFMAG

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=31968 LMHCC_RS05460 WP_012581289.1 1098298..1100694(+) (recD2) [Listeria monocytogenes HCC23]
ATGGCTGAACAAGAATCACTCGCTCTATTTAACGATACACCAGAAGAACTTTTCATGAAGGGCACGATGTTGTCCACCAT
TTTTTACAATGCCGAAAACCTCTTTTCTGTTGTACGAATATTGGTCAAAGAAACCAATGCGGATTGGGACGAAAAAGATA
TTATCGTAACTGGCTTTTTCCCAGCGCTTCACGAGCAAGAAGTGTACACTTTCTACGGAAAAATGCAGGAACATGCTAAA
TTTGGTCAACAGTTTAAAGCAGACCGATTTCGTAAGGAAATGCCACAATCACGAGCGGGTTTAATTAGTTATCTATCTGG
TGAACTTTTTAAAGGCATTGGTAAAGTCACTGCTGAAAATATTGTGGATACGATTGGCGACGATGCTATCACAAAAATTT
TATCCGATCCGAGCTTGCTAAATACAGTACCTAAGTTGCCATCTGGCGCGGCAGAAAGTTTGCTTGCTTCCCTTAGAGAA
AATCAAGGGTTGGAGCATGTGATGGTCGGATTAAACGAATATGGCTTTGGTCCACAATTATCCATGAAAATTTTTCAGGC
TTATAAACAAAATGCGATTGAAGTATTAGAAAATAACCCCTATAAATTAATTGAAGACGTAAAAGGGATTGGTTTTCATC
GTGCCGACGAACTTGGGCGGAAACTAGGTCTTGGCGGGAATCATCCAGAACGGCTTCGTGCTGGGATTTTATTTATGTTA
GATTCGGTTTGTATGCAACAAGGTCATGTATATATGGAGCAAGAGGTTCTGCTCGGAGAAGTAACTTATTTACTGGAAGA
AAGCGAAGGCATTCGTATTGACCAAAATATTTTAGTGGCTCAAGTAGAAAAATTAGCCGAGGAACAAAAGATTATCACGG
AAAATACACGTGTTTACATGCCATCGCTCTATTATTCAGAGAGCGGCTTTGCATATCACGTGAAGCGAATGCTTAAACAA
ACAGAATACCAAGAACAATTTCCGCAATCTGAATTTCTGCTAGCTCTAGGTGAATTAGAAGAACGGATTGGAGTTCACTA
CGGAGATTCTCAACGTCAGGCGTTAGAACAAGCGTTAATGTCTCCGATGCTCGTACTTACTGGTGGTCCCGGAACAGGGA
AAACAACAGTTATTAAAGGGATAGTAGAGTTGTATGCGGAGCTAAATGGTGTAAGTCTTGATCCGCATGCCTATAAAGAT
GGAGCAACGTTTCCTGTGCTTCTTGCCGCTCCAACAGGTCGCGCTGCTAAACGAATGTCAGAATCAACTGGACTTCCGGC
GATGACTATTCACCGTCTGCTTGGAATGAACGGTCAGGAACAAATGGATGATGATGCAGAGCGGCTTATTGATGGACGAC
TATTGATTGTAGATGAGATGTCGATGGTTGATATTTGGCTTGCTAACCAATTATTTCGTGCTTTACCAGCGCATATGCAA
GTCGTACTCGTTGGTGACCAAGATCAATTGCCGTCTGTTGGACCAGGTCAAGTACTCAAAGATATTCTTCAATCAGAACA
AATTCCAACCGTAGCCCTTTCAGATATTTATCGCCAAAAGGATGGCTCATCCATTATCGAAATGGCGCATTATATAAAAG
AGGGAATGTTGCCAGCTGATTTCACCAAAAATAGCGCCGATCGCTCTTTTTTCCATTGTACGGTAAACCAAATTGGCGAT
GTAGTCGAACAAGTGGTGAAAAATGCCAAAAACAAAGGATTTCGAGCAAAAGATATCCAAGTTTTAGCGCCGATGTATCG
CGGTCCAGCAGGGATTGACGTTTTAAATAAAAAACTACAAGAAATCTTCAATCCAAATGATACCGGTCGTCGGAAAGAAG
TTCAATTTGGCGAAATAAAATATCGCGTGCATGATAAAGTACTTCAATTAATTAACCAACCGGAAAAGAATGTGTTTAAT
GGGGACATAGGTGAAATTGTGTCTATTATCTATGCGAAAGAAAATACCGAAAAACAAGATTTGATTGTCGTTCAATTTGA
CCAAACAGAGGTTTCTTACTATAGACAAGAATTTAATCAATTGACCCATGCTTACTGTTGTTCGATTCATAAAGCACAGG
GAAGTGAATTTCCGATAGTGATTATGCCGATTGTTCGCAGTTATTACCGGATGCTACGCCGCGATTTACTTTACACAGGG
GTAACGAGGAGTAAACAGTTTCTTATTCTTTGCGGGGAAGAAGAAGCATTTCGAATGGGGATAGAACGAATTGATGAAAA
TAAGCGCAATACAACACTCTCTGAACGTTTAATGAGCGAAGATGTATTATTAGAGCAAATGACGAATAAACGAATTCTTA
CTGCTGAAAATATTACTGAAATAGATCCGATGATTGGAATGGAAGGGATTACGCCAGAACAATTTATGGCAGGATGA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(595-666)

Helix-hairpin-helix containing domain (HHH_RecD2)

(160-251)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(683-731)

AAA domain (AAA_30)

(347-554)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E0UX87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

57.234

98.747

0.565

Multiple sequence alignment