Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   D9C16_RS04790 Genome accession   NZ_CP032861
Coordinates   829816..830595 (-) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis subsp. subtilis strain N1-1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 824816..835595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C16_RS04760 (D9C16_04760) fliH 824847..825599 (-) 753 WP_014479782.1 flagellar assembly protein FliH -
  D9C16_RS04765 (D9C16_04765) fliG 825592..826608 (-) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  D9C16_RS04770 (D9C16_04770) fliF 826621..828218 (-) 1598 Protein_946 flagellar basal-body MS-ring/collar protein FliF -
  D9C16_RS04775 (D9C16_04775) fliE 828264..828584 (-) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  D9C16_RS04780 (D9C16_04780) flgC 828595..829047 (-) 453 WP_014479779.1 flagellar basal body rod protein FlgC -
  D9C16_RS04785 (D9C16_04785) flgB 829047..829436 (-) 390 WP_014479778.1 flagellar basal body rod protein FlgB -
  D9C16_RS04790 (D9C16_04790) codY 829816..830595 (-) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  D9C16_RS04795 (D9C16_04795) hslU 830635..832038 (-) 1404 WP_014476801.1 HslU--HslV peptidase ATPase subunit -
  D9C16_RS04800 (D9C16_04800) clpQ 832055..832600 (-) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  D9C16_RS04805 (D9C16_04805) xerC 832613..833527 (-) 915 WP_014479777.1 tyrosine recombinase XerC -
  D9C16_RS04810 (D9C16_04810) trmFO 833595..834902 (-) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=319549 D9C16_RS04790 WP_003220850.1 829816..830595(-) (codY) [Bacillus subtilis subsp. subtilis strain N1-1]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=319549 D9C16_RS04790 WP_003220850.1 829816..830595(-) (codY) [Bacillus subtilis subsp. subtilis strain N1-1]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCTTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment