Detailed information NTG0319510

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: D9C14_RS16740
• Genome accession: NZ_CP032860
• Coordinates: 3199478..3200257 (+)
• Length: 259 a.a.
• NCBI ID: WP_003220850.1
• Uniprot ID: G4NSM6
• Organism: Bacillus subtilis subsp. subtilis strain SSJ-1
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 3194478..3205257

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D9C14_RS16720 (D9C14_16720)	trmFO	3195171..3196478 (+)	1308	WP_029317796.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
D9C14_RS16725 (D9C14_16725)	xerC	3196546..3197460 (+)	915	WP_003231988.1	tyrosine recombinase XerC	-
D9C14_RS16730 (D9C14_16730)	clpQ	3197473..3198018 (+)	546	WP_003238555.1	ATP-dependent protease subunit ClpQ	-
D9C14_RS16735 (D9C14_16735)	hslU	3198035..3199438 (+)	1404	WP_014476801.1	HslU--HslV peptidase ATPase subunit	-
D9C14_RS16740 (D9C14_16740)	codY	3199478..3200257 (+)	780	WP_003220850.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
D9C14_RS16745 (D9C14_16745)	flgB	3200637..3201026 (+)	390	WP_003245656.1	flagellar basal body rod protein FlgB	-
D9C14_RS16750 (D9C14_16750)	flgC	3201026..3201478 (+)	453	WP_003245521.1	flagellar basal body rod protein FlgC	-
D9C14_RS16755 (D9C14_16755)	fliE	3201489..3201809 (+)	321	WP_003238544.1	flagellar hook-basal body complex protein FliE	-
D9C14_RS16760 (D9C14_16760)	fliF	3201855..3203465 (+)	1611	WP_010886506.1	flagellar basal-body MS-ring/collar protein FliF	-
D9C14_RS16765 (D9C14_16765)	fliG	3203478..3204494 (+)	1017	WP_003231981.1	flagellar motor switch protein FliG	-
D9C14_RS16770 (D9C14_16770)	fliH	3204487..3205239 (+)	753	WP_003244804.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29013.22 Da
• Isoelectric Point: 4.6514

>NTDB_id=319510 D9C14_RS16740 WP_003220850.1 3199478..3200257(+) (codY) [Bacillus subtilis subsp. subtilis strain SSJ-1]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=319510 D9C14_RS16740 WP_003220850.1 3199478..3200257(+) (codY) [Bacillus subtilis subsp. subtilis strain SSJ-1]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

• CodY GAF-like domain (CodY) (3-178)

3D structure

• AlphaFold DB: G4NSM6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	100	100	1
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.451	98.456	0.467