Detailed information NTG0319368

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: D9C11_RS20645
• Genome accession: NZ_CP032855
• Coordinates: 3843786..3844565 (+)
• Length: 259 a.a.
• NCBI ID: WP_003220850.1
• Uniprot ID: G4NSM6
• Organism: Bacillus subtilis subsp. subtilis strain PJ-7
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 3838786..3849565

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D9C11_RS20625 (D9C11_20625)	trmFO	3839479..3840786 (+)	1308	WP_003244725.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
D9C11_RS20630 (D9C11_20630)	xerC	3840854..3841768 (+)	915	WP_014479777.1	tyrosine recombinase XerC	-
D9C11_RS20635 (D9C11_20635)	clpQ	3841781..3842326 (+)	546	WP_003238555.1	ATP-dependent protease subunit ClpQ	-
D9C11_RS20640 (D9C11_20640)	hslU	3842343..3843746 (+)	1404	WP_121591795.1	HslU--HslV peptidase ATPase subunit	-
D9C11_RS20645 (D9C11_20645)	codY	3843786..3844565 (+)	780	WP_003220850.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
D9C11_RS20650 (D9C11_20650)	flgB	3844945..3845334 (+)	390	WP_041335963.1	flagellar basal body rod protein FlgB	-
D9C11_RS20655 (D9C11_20655)	flgC	3845334..3845786 (+)	453	WP_041335966.1	flagellar basal body rod protein FlgC	-
D9C11_RS20660 (D9C11_20660)	fliE	3845797..3846117 (+)	321	WP_003238544.1	flagellar hook-basal body complex protein FliE	-
D9C11_RS20665 (D9C11_20665)	fliF	3846163..3847773 (+)	1611	WP_072557157.1	flagellar basal-body MS-ring/collar protein FliF	-
D9C11_RS20670 (D9C11_20670)	fliG	3847786..3848802 (+)	1017	WP_003231981.1	flagellar motor switch protein FliG	-
D9C11_RS20675 (D9C11_20675)	fliH	3848795..3849547 (+)	753	WP_172843761.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29013.22 Da
• Isoelectric Point: 4.6514

>NTDB_id=319368 D9C11_RS20645 WP_003220850.1 3843786..3844565(+) (codY) [Bacillus subtilis subsp. subtilis strain PJ-7]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=319368 D9C11_RS20645 WP_003220850.1 3843786..3844565(+) (codY) [Bacillus subtilis subsp. subtilis strain PJ-7]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGTTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTTCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

• CodY GAF-like domain (CodY) (3-178)

3D structure

• AlphaFold DB: G4NSM6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	100	100	1
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.451	98.456	0.467