Detailed information NTG0319235

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: D9C10_RS06920
• Genome accession: NZ_CP032853
• Coordinates: 1283285..1284064 (+)
• Length: 259 a.a.
• NCBI ID: WP_003220850.1
• Uniprot ID: G4NSM6
• Organism: Bacillus subtilis subsp. subtilis strain MH-1
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1278285..1289064

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D9C10_RS06900 (D9C10_06900)	trmFO	1278978..1280285 (+)	1308	WP_003244725.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
D9C10_RS06905 (D9C10_06905)	xerC	1280353..1281267 (+)	915	WP_003231988.1	tyrosine recombinase XerC	-
D9C10_RS06910 (D9C10_06910)	clpQ	1281280..1281825 (+)	546	WP_003238555.1	ATP-dependent protease subunit ClpQ	-
D9C10_RS06915 (D9C10_06915)	hslU	1281842..1283245 (+)	1404	WP_121548844.1	HslU--HslV peptidase ATPase subunit	-
D9C10_RS06920 (D9C10_06920)	codY	1283285..1284064 (+)	780	WP_003220850.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
D9C10_RS06925 (D9C10_06925)	flgB	1284444..1284833 (+)	390	WP_014479778.1	flagellar basal body rod protein FlgB	-
D9C10_RS06930 (D9C10_06930)	flgC	1284833..1285285 (+)	453	WP_014479779.1	flagellar basal body rod protein FlgC	-
D9C10_RS06935 (D9C10_06935)	fliE	1285296..1285616 (+)	321	WP_003238544.1	flagellar hook-basal body complex protein FliE	-
D9C10_RS06940 (D9C10_06940)	fliF	1285662..1287272 (+)	1611	WP_046160402.1	flagellar basal-body MS-ring/collar protein FliF	-
D9C10_RS06945 (D9C10_06945)	fliG	1287285..1288301 (+)	1017	WP_003231981.1	flagellar motor switch protein FliG	-
D9C10_RS06950 (D9C10_06950)	fliH	1288294..1289046 (+)	753	WP_205589306.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29013.22 Da
• Isoelectric Point: 4.6514

>NTDB_id=319235 D9C10_RS06920 WP_003220850.1 1283285..1284064(+) (codY) [Bacillus subtilis subsp. subtilis strain MH-1]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=319235 D9C10_RS06920 WP_003220850.1 1283285..1284064(+) (codY) [Bacillus subtilis subsp. subtilis strain MH-1]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCTTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

• CodY GAF-like domain (CodY) (3-178)

3D structure

• AlphaFold DB: G4NSM6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	100	100	1
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.451	98.456	0.467