Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   FC629_RS26080 Genome accession   NZ_CP039988
Coordinates   5564685..5565110 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain T2436     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5559685..5570110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FC629_RS26065 (FC629_26775) pilX 5560255..5560842 (+) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  FC629_RS26070 (FC629_26780) pilY1 5560854..5564339 (+) 3486 WP_096248553.1 type 4a pilus biogenesis protein PilY1 -
  FC629_RS26075 (FC629_26785) pilY2 5564341..5564688 (+) 348 WP_003094713.1 type 4a fimbrial biogenesis protein PilY2 -
  FC629_RS26080 (FC629_26790) comF 5564685..5565110 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  FC629_RS26085 (FC629_26795) ispH 5565155..5566099 (-) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  FC629_RS26090 (FC629_26800) fkpB 5566185..5566625 (-) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  FC629_RS26095 (FC629_26805) lspA 5566618..5567127 (-) 510 WP_003110420.1 signal peptidase II -
  FC629_RS26100 (FC629_26810) ileS 5567120..5569951 (-) 2832 WP_003094730.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=318906 FC629_RS26080 WP_003094721.1 5564685..5565110(+) (comF) [Pseudomonas aeruginosa strain T2436]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=318906 FC629_RS26080 WP_003094721.1 5564685..5565110(+) (comF) [Pseudomonas aeruginosa strain T2436]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCAGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACACCCACCAGCACTACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383

Multiple sequence alignment