Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   FCJ76_RS06275 Genome accession   NZ_CP039935
Coordinates   1205972..1206889 (+) Length   305 a.a.
NCBI ID   WP_015252359.1    Uniprot ID   -
Organism   Bacillus subtilis strain H19     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1200972..1211889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FCJ76_RS06260 trpS 1201552..1202544 (-) 993 WP_086344582.1 tryptophan--tRNA ligase -
  FCJ76_RS06265 oppA 1203288..1204925 (+) 1638 WP_086343705.1 oligopeptide ABC transporter substrate-binding protein OppA -
  FCJ76_RS06270 oppB 1205033..1205968 (+) 936 WP_003245554.1 oligopeptide ABC transporter permease OppB -
  FCJ76_RS06275 amiD 1205972..1206889 (+) 918 WP_015252359.1 oligopeptide ABC transporter permease OppC Regulator
  FCJ76_RS06280 oppD 1206894..1207970 (+) 1077 WP_072173823.1 oligopeptide ABC transporter ATP-binding protein OppD -
  FCJ76_RS06285 oppF 1207972..1208889 (+) 918 WP_003245567.1 oligopeptide ABC transporter ATP-binding protein OppF -
  FCJ76_RS06290 yjbB 1208997..1210214 (+) 1218 WP_086344583.1 MFS transporter -
  FCJ76_RS06295 yjbC 1210378..1210956 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  FCJ76_RS06300 spx 1211137..1211532 (+) 396 WP_014476435.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33635.15 Da        Isoelectric Point: 10.2873

>NTDB_id=318729 FCJ76_RS06275 WP_015252359.1 1205972..1206889(+) (amiD) [Bacillus subtilis strain H19]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAILDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=318729 FCJ76_RS06275 WP_015252359.1 1205972..1206889(+) (amiD) [Bacillus subtilis strain H19]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTACTTATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGAGACATTTTCGTCCGTACATGGGTAGGGGCTCGAATCTCAAT
CTTTATCGGTGTTGCAGCTGCTATTCTCGATTTGCTGATCGGCGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGCA
GAACGGACGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTTCTGTTTA
AACATATCGTGCCAAACGCGATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCGATTTTCACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGTTTCAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364