Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   AFLV_RS04030 Genome accession   NC_011567
Coordinates   752781..755141 (+) Length   786 a.a.
NCBI ID   WP_041638048.1    Uniprot ID   -
Organism   Anoxybacillus flavithermus WK1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 747781..760141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AFLV_RS04015 (Aflv_0721) - 749137..749409 (+) 273 WP_049753997.1 post-transcriptional regulator -
  AFLV_RS04020 (Aflv_0722) secDF 749505..751751 (+) 2247 WP_012574403.1 protein translocase subunit SecDF -
  AFLV_RS04025 (Aflv_0723) - 751834..752727 (+) 894 WP_012574404.1 cation diffusion facilitator family transporter -
  AFLV_RS04030 (Aflv_0724) recJ 752781..755141 (+) 2361 WP_041638048.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  AFLV_RS04035 (Aflv_0725) - 755107..755619 (+) 513 WP_004889284.1 adenine phosphoribosyltransferase -
  AFLV_RS04040 (Aflv_0726) - 755724..757922 (+) 2199 WP_012574407.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  AFLV_RS04045 (Aflv_0727) dtd 757937..758377 (+) 441 WP_012574408.1 D-aminoacyl-tRNA deacylase -
  AFLV_RS15620 (Aflv_0728) - 758414..758587 (-) 174 WP_041638049.1 hypothetical protein -
  AFLV_RS04055 (Aflv_0729) - 758730..760001 (+) 1272 WP_041638050.1 N-acetylmuramoyl-L-alanine amidase -

Sequence

Protein


Download         Length: 786 a.a.        Molecular weight: 89082.03 Da        Isoelectric Point: 6.1937

>NTDB_id=31832 AFLV_RS04030 WP_041638048.1 752781..755141(+) (recJ) [Anoxybacillus flavithermus WK1]
MLASKTRWNIQQVNEQQVQMIAQALHITPLVASLLVSRGYHTVEAARSFFERKQSFHSPFLLNDMEKAVERIEKAITNDE
HILVFGDYDADGVSSTVVMVSALREKGANVSFYIPNRFTEGYGPNEQAFRLAKQQGVSLIITVDTGISALHEANVAKQLG
IDLIITDHHEPGPVLPEAYATIHPKISPNYPFKHLAGVGVAFKLAHALIGRVPYEWLDVVAIGTIADLVPLQDENHLLAR
LGIEQFRQTNRLGLQALCKQCGVSHTAVTEDTIAFMIGPRVNAAGRLDCADPAVQLLLTTDAHEADMLAEQIDAMNRERQ
QLVNEITEEAIQLVEQHYRDDRVLVVAKEGWNVGVIGIVASRLVEKFYRPTIVLSIDQEKGIAKGSARSIEGFDLFANLS
NCRDILPHFGGHPMAAGMTLSFHDVDELRRRLNEAAEQQLTDEHFIPITHIDLCCSISDVSLELIEQMNRLAPFGMGNPK
PRVLFQHVQLDTLRKIGTDQNHLKLLLAEEGKTLEAIGFGFGNIGDEIAPNVRLSIVGELAINEWNNFRKPQLMIQDIAV
NEWQLFDMRHIRHPSKFMASLPKEKRLLIAFHRDTVDALQLSAYADEIVYVSNERDAIMDVGGKYIVFLDLPPSQQIVKV
LLSCSLPERIYALFYQRENHFFSILPTREHFKWLYSFLHKRSPFDVRRYADDLARSRGWTKETILFMIQVFKELGFIIVE
NGIVSLGRDVQKRDLTESPSYRLKQAQAELEHMFLYSSYSQLKRWFDSLYEEENVNGFKTIRHDCS

Nucleotide


Download         Length: 2361 bp        

>NTDB_id=31832 AFLV_RS04030 WP_041638048.1 752781..755141(+) (recJ) [Anoxybacillus flavithermus WK1]
ATGTTAGCATCGAAAACCCGTTGGAATATTCAACAAGTAAACGAGCAACAAGTGCAAATGATTGCGCAAGCGCTACATAT
CACTCCGCTCGTTGCTTCATTGCTTGTTAGCCGCGGCTACCATACCGTTGAAGCCGCTCGTTCTTTTTTTGAGCGAAAGC
AATCGTTTCACTCACCATTTTTATTAAACGATATGGAAAAAGCGGTTGAGCGAATAGAGAAAGCGATTACAAACGATGAA
CATATTCTCGTTTTCGGTGATTATGATGCCGATGGAGTAAGCAGTACAGTCGTCATGGTCAGCGCATTACGAGAAAAAGG
GGCGAATGTGTCTTTTTACATTCCGAATCGTTTTACAGAAGGATACGGACCAAATGAACAAGCGTTTCGGCTAGCAAAAC
AACAAGGTGTTTCGCTTATCATTACAGTCGATACGGGCATTTCTGCTTTACATGAAGCCAACGTAGCGAAACAGCTTGGG
ATCGATTTAATTATTACCGATCATCATGAACCTGGTCCGGTATTACCGGAAGCGTACGCAACGATCCATCCGAAAATAAG
CCCGAATTATCCGTTTAAACATTTAGCTGGCGTCGGCGTAGCATTTAAACTTGCTCATGCGCTTATCGGGCGCGTGCCGT
ATGAATGGTTGGACGTTGTTGCAATCGGGACAATTGCCGATCTCGTTCCACTTCAAGACGAAAACCATTTACTCGCTCGG
TTGGGCATTGAACAATTTCGTCAAACGAACCGTCTCGGTTTACAGGCACTTTGTAAACAATGTGGCGTATCACATACAGC
TGTGACAGAAGATACGATTGCTTTCATGATCGGTCCGCGCGTTAATGCCGCCGGACGTCTCGATTGCGCTGATCCAGCTG
TTCAGCTGTTGCTGACGACAGATGCACACGAAGCGGACATGCTAGCGGAGCAAATTGATGCAATGAACCGCGAACGTCAA
CAACTTGTGAACGAGATAACAGAAGAAGCGATTCAACTTGTCGAGCAACATTATCGAGATGATCGTGTGTTAGTTGTGGC
GAAAGAAGGATGGAATGTCGGTGTTATTGGCATTGTGGCATCTCGTTTAGTCGAAAAGTTTTATCGTCCGACGATCGTGT
TAAGCATTGATCAAGAAAAAGGAATAGCCAAAGGATCAGCGCGAAGTATTGAGGGATTTGACTTATTCGCGAACTTGTCA
AATTGTCGCGATATTTTGCCGCATTTTGGCGGACATCCGATGGCGGCCGGAATGACGCTTTCTTTTCATGATGTAGATGA
ATTACGTCGTCGCCTAAACGAAGCAGCGGAGCAACAATTAACGGACGAACATTTCATTCCTATCACTCACATCGATTTAT
GTTGCTCCATCTCAGACGTTTCGCTTGAACTTATCGAACAAATGAATCGGCTTGCACCGTTTGGAATGGGGAATCCGAAG
CCGCGTGTCCTTTTCCAACATGTGCAACTCGATACATTGCGAAAAATCGGGACGGATCAAAACCACTTAAAATTGTTGTT
AGCGGAAGAAGGAAAAACGTTAGAAGCGATTGGATTCGGTTTTGGCAACATCGGTGACGAAATTGCACCGAACGTTCGTC
TTTCGATCGTAGGAGAACTTGCTATTAACGAATGGAACAACTTTCGAAAGCCGCAGTTAATGATTCAAGATATAGCAGTG
AATGAATGGCAATTGTTTGATATGCGTCACATTCGTCATCCAAGTAAGTTCATGGCGTCGCTACCGAAAGAAAAGCGGTT
ATTGATCGCTTTTCATCGCGACACAGTAGACGCATTGCAATTGTCGGCATATGCAGATGAAATTGTATATGTGTCGAACG
AACGAGACGCGATCATGGATGTAGGTGGAAAGTATATTGTTTTTCTTGATTTGCCTCCGTCACAGCAAATCGTTAAAGTT
TTATTAAGTTGTAGTTTACCTGAACGCATTTATGCGTTATTCTATCAAAGGGAGAATCACTTCTTTAGCATATTGCCAAC
GCGTGAACATTTTAAGTGGTTATATTCCTTTTTGCATAAGCGTAGCCCGTTTGATGTGCGACGTTACGCTGATGACTTAG
CTCGCTCGCGCGGATGGACAAAAGAAACGATTTTATTTATGATTCAAGTGTTTAAAGAGCTTGGCTTTATAATTGTTGAA
AACGGAATCGTTTCTTTAGGTCGCGATGTCCAAAAACGGGATTTAACGGAATCGCCTTCTTACCGATTGAAACAAGCGCA
GGCAGAGCTCGAGCATATGTTTTTATACTCATCTTATTCCCAACTGAAACGTTGGTTTGATTCATTGTATGAGGAGGAAA
ATGTCAATGGATTTAAAACAATACGTCACGATTGTTCCTGA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(564-766)

DHHA1 domain (DHHA1)

(313-435)

DHH family (DHH)

(81-224)

RecJ OB domain (RecJ_OB)

(451-557)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

54.183

98.855

0.536

Multiple sequence alignment