Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   D7385_RS07650 Genome accession   NZ_CP032670
Coordinates   1476323..1478719 (-) Length   798 a.a.
NCBI ID   WP_069008758.1    Uniprot ID   A0A6X4M0R2
Organism   Listeria monocytogenes strain 52860     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1471323..1483719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7385_RS07630 (D7385_07645) - 1471785..1472480 (-) 696 WP_003725979.1 ABC transporter ATP-binding protein -
  D7385_RS07635 (D7385_07650) - 1472489..1473994 (-) 1506 WP_003730151.1 ABC transporter permease -
  D7385_RS07640 (D7385_07655) pieR 1474161..1474847 (+) 687 WP_003730152.1 two component system response regulator PieR -
  D7385_RS07645 (D7385_07660) pieS 1474844..1476283 (+) 1440 WP_014589074.1 two component system sensor histidine kinase PieS -
  D7385_RS07650 (D7385_07665) recD2 1476323..1478719 (-) 2397 WP_069008758.1 ATP-dependent RecD-like DNA helicase Machinery gene
  D7385_RS07655 (D7385_07670) - 1478747..1479385 (-) 639 WP_077904947.1 tetratricopeptide repeat protein -
  D7385_RS07660 (D7385_07675) - 1479426..1480166 (-) 741 WP_070211349.1 alpha/beta hydrolase -
  D7385_RS07665 (D7385_07680) mnmA 1480284..1481399 (-) 1116 WP_149172874.1 tRNA 2-thiouridine(34) synthase MnmA -
  D7385_RS07670 (D7385_07685) - 1481418..1482566 (-) 1149 WP_069891291.1 cysteine desulfurase family protein -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 90076.17 Da        Isoelectric Point: 4.8098

>NTDB_id=317957 D7385_RS07650 WP_069008758.1 1476323..1478719(-) (recD2) [Listeria monocytogenes strain 52860]
MAEQESLALFNDTPEELFMKGTMLSTIFYNAENLFSVVRILVKETNADWDEKDIIVTGFFPALHEQEVYTFYGKMQEHAK
FGQQFKADRFRKEMPQSRAGLISYLSGELFKGIGKVTAENIVDTIGDDAITKILSDPSLLNTVPKLPSGAAESLLASLRE
NQGLEHVMVGLNEYGFGPQLSMKIFQAYKQNAIEVLENNPYKLIEDVKGIGFQRADELGRKLGLGGNHPERLRAGILFML
DSVCMQQGHVYMEQEVLLGEVTYLLEESEGIRIDQNILVAQVEKLAEEQKIITENTRVYMPSLYYSESGFAYHVKRMLKQ
TEYQEQFPQSEFLLALGELEERIGVHYGDSQRQALEQALMSPMLVLTGGPGTGKTTVIKGIVELYAELNGVSLDPHAYKD
GATFPVLLAAPTGRAAKRMSESTGLPAMTIHRLLGMNGQEQMDDDAERLIDGRLLIVDEMSMVDIWLANQLFRALPAHMQ
VVLVGDQDQLPSVGPGQVLKDILQSEQIPTVALSDIYRQKDGSSIIEMAHYIKEGMLPADFTKNSADRSFFHCTVNQIGD
VVEQVVKNAKNKGFRAKDIQVLAPMYRGPAGIDILNKKLQEIFNPNDTGRRKEVQFGEIKYRVHDKVLQLINQPEKNVFN
GDIGEIVSIIYAKENTEKQDLIVVQFDQTEVSYYRQEFNQLTHAYCCSIHKAQGSEFPIVIMPIVRSYYRMLRRDLLYTG
VTRSKQFLILCGEEEAFRMGIERIDENKRNTTLSERLMSEDVLLEQMTNKRILTAENITEIDPMIGMEGITPEQFMAG

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=317957 D7385_RS07650 WP_069008758.1 1476323..1478719(-) (recD2) [Listeria monocytogenes strain 52860]
ATGGCTGAACAAGAATCACTCGCTCTATTTAACGATACACCAGAAGAACTTTTCATGAAGGGCACGATGTTGTCCACCAT
TTTTTACAATGCCGAAAACCTCTTTTCTGTTGTACGAATATTGGTCAAAGAAACCAATGCGGATTGGGACGAAAAAGATA
TTATCGTAACCGGCTTTTTCCCAGCGCTTCACGAGCAAGAAGTGTACACTTTCTACGGAAAAATGCAGGAACATGCTAAA
TTTGGTCAACAGTTTAAAGCAGACCGGTTTCGTAAAGAAATGCCACAATCACGAGCGGGTTTAATTAGTTATCTATCTGG
TGAACTTTTTAAAGGCATTGGTAAAGTCACTGCTGAAAATATTGTGGATACGATTGGCGACGATGCTATCACAAAAATTT
TATCCGATCCGAGCTTGCTAAATACAGTACCTAAGTTGCCATCTGGCGCGGCAGAAAGTTTGCTTGCTTCCCTTAGAGAA
AATCAAGGGTTGGAGCATGTGATGGTCGGATTAAACGAATATGGCTTTGGCCCACAATTATCCATGAAAATTTTTCAGGC
TTATAAACAAAATGCGATTGAAGTATTAGAAAATAACCCCTATAAATTAATTGAAGACGTAAAAGGAATTGGTTTTCAGC
GGGCCGACGAACTTGGGCGGAAACTAGGTCTTGGTGGGAATCATCCAGAACGGCTTCGTGCTGGGATTTTATTTATGTTA
GATTCGGTTTGTATGCAACAAGGTCATGTATATATGGAGCAAGAGGTTCTGCTCGGAGAAGTAACTTATTTACTGGAAGA
AAGCGAAGGCATTCGTATTGACCAAAATATTTTAGTGGCTCAAGTAGAAAAATTAGCCGAGGAACAAAAGATTATCACGG
AAAATACACGTGTTTACATGCCATCGCTCTATTATTCAGAGAGCGGCTTTGCATATCACGTGAAGCGAATGCTTAAACAA
ACAGAATACCAAGAACAATTTCCGCAATCCGAATTTCTGCTAGCTCTAGGTGAATTAGAAGAACGGATTGGAGTTCACTA
CGGAGATTCTCAACGTCAGGCGTTAGAACAAGCGTTAATGTCTCCGATGCTCGTACTTACTGGTGGTCCCGGAACAGGGA
AAACAACAGTTATTAAAGGGATAGTAGAGTTGTATGCGGAGCTAAATGGTGTAAGTCTTGATCCGCATGCCTATAAAGAT
GGAGCAACGTTTCCTGTGCTTCTTGCCGCTCCAACAGGTCGCGCTGCTAAACGAATGTCAGAATCAACTGGACTTCCGGC
GATGACTATTCACCGTCTGCTTGGAATGAACGGTCAGGAACAAATGGATGATGATGCAGAGCGGCTTATTGATGGACGAC
TATTGATTGTAGATGAGATGTCGATGGTTGATATTTGGCTTGCTAACCAATTATTTCGTGCTTTACCAGCGCATATGCAA
GTCGTACTCGTTGGTGACCAAGATCAATTGCCGTCTGTTGGACCAGGTCAAGTACTCAAAGATATTCTTCAATCAGAACA
AATTCCAACCGTAGCCCTTTCAGATATTTATCGCCAAAAGGATGGCTCATCCATTATCGAAATGGCGCATTATATAAAAG
AGGGAATGTTGCCAGCTGATTTCACCAAAAATAGCGCCGATCGCTCTTTTTTCCATTGTACGGTAAACCAAATTGGCGAT
GTAGTCGAACAAGTGGTGAAAAATGCCAAAAACAAAGGATTTCGAGCAAAAGATATCCAAGTTTTAGCACCGATGTATCG
CGGTCCAGCAGGGATTGACATTTTAAATAAAAAACTACAAGAAATCTTCAATCCAAATGATACCGGTCGTCGGAAAGAAG
TTCAATTTGGCGAAATAAAATATCGCGTGCATGATAAAGTACTTCAATTAATTAACCAACCGGAAAAGAATGTGTTTAAT
GGGGACATTGGTGAAATTGTGTCTATTATCTATGCGAAAGAAAATACCGAAAAACAAGATTTGATTGTCGTTCAATTTGA
CCAAACAGAGGTTTCTTACTATAGACAAGAATTTAATCAATTGACCCATGCTTACTGTTGTTCGATTCATAAAGCACAGG
GAAGTGAATTTCCGATAGTGATTATGCCGATTGTTCGCAGTTATTACCGGATGCTACGCCGCGATTTACTTTACACAGGG
GTAACGAGGAGTAAACAGTTTCTTATTCTTTGCGGGGAAGAAGAAGCATTTCGAATGGGGATAGAACGAATTGATGAAAA
TAAGCGCAATACAACACTCTCTGAACGTTTAATGAGCGAAGATGTATTATTAGAGCAAATGACGAATAAACGTATTCTTA
CTGCTGAAAATATTACTGAAATAGATCCGATGATTGGAATGGAAGGGATTACTCCAGAACAATTTATGGCAGGATGA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(595-666)

Helix-hairpin-helix containing domain (HHH_RecD2)

(160-251)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(683-731)

AAA domain (AAA_30)

(347-554)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6X4M0R2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

57.234

98.747

0.565

Multiple sequence alignment