Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   E8M06_RS01995 Genome accession   NZ_CP039462
Coordinates   397195..397983 (+) Length   262 a.a.
NCBI ID   WP_023369388.1    Uniprot ID   -
Organism   Streptococcus suis strain WUSS351     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 392195..402983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E8M06_RS11335 - 392217..393582 (+) 1366 Protein_350 Cof-type HAD-IIB family hydrolase -
  E8M06_RS01980 (E8M06_01980) - 393584..395084 (-) 1501 Protein_351 IS1182 family transposase -
  E8M06_RS01985 (E8M06_01985) - 395222..395674 (-) 453 WP_004195772.1 universal stress protein -
  E8M06_RS01990 (E8M06_01990) - 395829..397043 (+) 1215 WP_024401519.1 pyridoxal phosphate-dependent aminotransferase -
  E8M06_RS01995 (E8M06_01995) codY 397195..397983 (+) 789 WP_023369388.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  E8M06_RS02000 (E8M06_02000) - 397985..398536 (+) 552 WP_136581095.1 isochorismatase family cysteine hydrolase -
  E8M06_RS02005 (E8M06_02005) rplS 398802..399149 (+) 348 WP_011921928.1 50S ribosomal protein L19 -
  E8M06_RS02010 (E8M06_02010) - 399336..400010 (+) 675 WP_012774968.1 hydrolase -
  E8M06_RS02015 (E8M06_02015) gatC 400227..400529 (+) 303 WP_011921930.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  E8M06_RS02020 (E8M06_02020) gatA 400529..401995 (+) 1467 WP_044692327.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29334.37 Da        Isoelectric Point: 4.6190

>NTDB_id=317906 E8M06_RS01995 WP_023369388.1 397195..397983(+) (codY) [Streptococcus suis strain WUSS351]
MTTLLEKTRNITSILKRSEEQLAEELPYNAIAEHLSAIIDCNSCIINSEGEVLGYHMNYETNNDRVEEFFQNKQFPEGYV
KAVAQVYDTQVNLPVESELTAIPVESRSTYPNGLTTIAPIHVTGIRFGSLIIWRNDEQFHDDDLILVEIAATVVGIQLLN
FQREEDEKNIRRRAAVNMAVNTLSYSEMKAVAAILGELDGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLIPAIFDEIKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=317906 E8M06_RS01995 WP_023369388.1 397195..397983(+) (codY) [Streptococcus suis strain WUSS351]
ATGACAACATTATTAGAGAAGACACGGAATATTACTTCTATTTTGAAGCGTTCCGAAGAGCAATTGGCAGAAGAATTGCC
TTACAATGCCATTGCTGAGCATTTATCAGCTATTATTGACTGCAATTCGTGCATCATTAATAGTGAAGGTGAAGTTTTGG
GATACCACATGAACTATGAGACGAACAATGATCGTGTGGAAGAATTTTTCCAAAACAAACAATTCCCAGAAGGATATGTA
AAAGCAGTTGCGCAGGTTTACGATACGCAGGTTAATTTGCCTGTCGAGAGCGAGTTGACTGCCATCCCTGTCGAATCACG
ATCGACTTATCCAAACGGGCTGACAACGATAGCGCCTATCCACGTAACGGGGATTCGTTTTGGTTCGCTTATTATTTGGC
GGAATGATGAGCAGTTTCACGATGATGATTTGATTTTGGTTGAGATTGCGGCAACAGTAGTTGGTATTCAGTTACTTAAT
TTCCAACGGGAAGAAGACGAGAAGAATATCCGTCGTCGTGCGGCAGTTAATATGGCGGTAAATACGCTATCTTACTCAGA
AATGAAGGCAGTTGCAGCTATTTTGGGTGAATTGGATGGCAATGAGGGGCAATTGACTGCTTCTGTGATTGCAGATCGTA
TCGGTATTACACGCTCGGTGATTGTGAATGCACTGCGTAAGTTGGAGAGTGCAGGGATTATTGAAAGTCGTTCTTTGGGA
ATGAAGGGGACTTATTTAAAAGTTCTCATCCCAGCTATTTTTGATGAAATTAAGAAACGTGACTACTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(202-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

59.16

100

0.592
  codY Bacillus subtilis subsp. subtilis str. 168

52.846

93.893

0.496