Detailed information NTG0317902

Bioinformatically predicted

Overview

• Name: recD/recD2/recDB
• Type: Machinery gene
• Locus tag: E8M06_RS01250
• Genome accession: NZ_CP039462
• Coordinates: 237876..240365 (-)
• Length: 829 a.a.
• NCBI ID: WP_136581034.1
• Uniprot ID: -
• Organism: Streptococcus suis strain WUSS351
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 232876..245365

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E8M06_RS01220 (E8M06_01220)	dinB	233493..234560 (+)	1068	WP_014637367.1	DNA polymerase IV	-
E8M06_RS01225 (E8M06_01225)	-	234603..235022 (+)	420	WP_015646348.1	Rrf2 family transcriptional regulator	-
E8M06_RS01230 (E8M06_01230)	-	235262..235888 (+)	627	WP_136581032.1	NAD(P)-dependent oxidoreductase	-
E8M06_RS01235 (E8M06_01235)	-	235990..236910 (+)	921	WP_136581033.1	PfkB family carbohydrate kinase	-
E8M06_RS01240 (E8M06_01240)	-	236958..237596 (+)	639	WP_168800239.1	endonuclease III domain-containing protein	-
E8M06_RS01250 (E8M06_01250)	recD/recD2/recDB	237876..240365 (-)	2490	WP_136581034.1	ATP-dependent RecD-like DNA helicase	Machinery gene
E8M06_RS01255 (E8M06_01255)	lepB	240429..241058 (-)	630	WP_136581035.1	signal peptidase I	-
E8M06_RS01260 (E8M06_01260)	rnhC	241068..241958 (-)	891	WP_136581036.1	ribonuclease HIII	-
E8M06_RS01265 (E8M06_01265)	-	242043..243026 (+)	984	WP_136581037.1	Gfo/Idh/MocA family oxidoreductase	-
E8M06_RS01275 (E8M06_01275)	-	243375..244577 (+)	1203	WP_168800240.1	LysM domain-containing protein	-

Sequence

Protein

• Length: 829 a.a.
• Molecular weight: 93119.45 Da
• Isoelectric Point: 4.5631

>NTDB_id=317902 E8M06_RS01250 WP_136581034.1 237876..240365(-) (recD/recD2/recDB) [Streptococcus suis strain WUSS351]
MNEVYFTGTIDRIIFENPSNFYKILLLEIEETDADYDDYEIIVTGTIADVIEGEDYRFYGNLVTHPKYGQQLQISRYERS
KPTSAGLVKYFSSEHFKGIGRKTAEKIVELYGEDTIDKILAEPEKLTQITGLSRKNMQAFVEKLRLNYGTELILAKLAEY
GIPNKLAFQIQDQYKEKTLQIIEENPYQLVEDVQGLGFTIADRIAENLGIASDSPQRFRAGMLFSLIHRSMETGDTYVEA
RDLLEATLELLEKSRHTELEPAAVAKELTGLIADDKVQQEGTKIFDNSLYFAEHGIHKNLIRLMGKNGFKPFPRADVEAA
IAELETMSSLTYDDIQKEAIVQAITNPLFILTGGPGTGKTTVINGIIAVYAILHKIDLTRNREECPVLLAAPTGRAARRM
NELTGLPSATIHRHLGLVEGQEESYRDDYLEADFIIVDEFSMVDTWLANQLFQNISSQTQVLIVGDAEQLPSVSPGQVLA
DLLKIDKLPSITLERIYRQSDDSTIVTLASQIRQGALPSDFREKKADRSYFEAQNEQIPALIERIVGAAIKSGIPANEVQ
ILAPMYRGAAGIDQLNTMTQALLNPLEEGELEFLHNDQAFRQGDRVIHLVNNAEANVFNGDLGYITDLLPAKYTDSKQDE
ITINFDGSEVTYPRNEWYKITLAYAMSIHKSQGSEFQVVILPITRTSHRMLQRNLVYTAITRSKSKLILLGEISAFDYAV
KNAGTVRKTYLVPRFQGEMAEQDSKEALAEKAESKTAATTQTQPPTQPDRKEQVDVVKENNQQLSLLDQDQPEKTSPQPT
EYILTVDNLLTIDPMIGIEQADIEEFFKA

Nucleotide

• Length: 2490 bp

>NTDB_id=317902 E8M06_RS01250 WP_136581034.1 237876..240365(-) (recD/recD2/recDB) [Streptococcus suis strain WUSS351]
ATGAACGAAGTGTATTTTACCGGTACTATTGACCGGATTATTTTTGAAAATCCTAGTAATTTTTATAAAATCCTTCTCCT
TGAAATCGAGGAGACAGACGCAGACTATGATGACTACGAAATTATTGTGACCGGAACGATTGCCGATGTCATTGAAGGAG
AAGACTATCGTTTCTATGGCAATCTGGTCACCCATCCCAAGTATGGTCAGCAGCTGCAAATTTCGCGTTACGAACGCAGC
AAGCCTACCTCAGCTGGTCTAGTCAAGTACTTCTCCAGCGAGCATTTCAAGGGAATTGGACGCAAAACAGCTGAAAAAAT
CGTTGAGCTCTATGGCGAAGATACCATTGATAAGATTTTAGCTGAACCTGAAAAACTAACCCAAATCACAGGTCTATCCC
GTAAGAACATGCAGGCATTTGTCGAAAAACTCCGCCTCAATTATGGAACCGAGTTGATCTTGGCAAAACTAGCCGAGTAT
GGCATTCCCAATAAATTGGCCTTTCAAATCCAAGACCAGTATAAGGAAAAAACACTTCAGATTATTGAAGAAAATCCCTA
TCAACTGGTCGAAGATGTCCAGGGGCTCGGCTTTACCATTGCCGATAGGATTGCGGAAAATCTAGGAATTGCCAGTGATT
CACCCCAACGTTTTCGGGCTGGCATGCTCTTTAGCCTCATTCATCGCTCCATGGAAACAGGCGATACCTATGTGGAGGCC
AGAGACTTGCTGGAAGCAACTCTTGAACTGCTGGAAAAATCCCGCCATACAGAGCTGGAACCCGCTGCTGTTGCCAAAGA
ATTGACAGGACTGATTGCAGACGACAAGGTACAGCAAGAAGGCACAAAGATTTTTGACAACAGCCTCTACTTTGCCGAAC
ATGGTATCCATAAAAACCTGATCCGCCTGATGGGAAAAAATGGTTTCAAACCCTTCCCACGCGCAGACGTTGAGGCTGCT
ATAGCAGAGCTGGAAACTATGTCTTCCCTGACCTACGATGACATTCAAAAAGAAGCCATCGTCCAAGCCATTACCAATCC
GCTTTTCATTCTGACAGGCGGACCAGGGACTGGTAAAACAACAGTTATCAACGGTATTATCGCGGTCTATGCCATCTTGC
ATAAGATTGATCTGACTCGCAACCGAGAAGAATGCCCAGTCCTCCTAGCCGCTCCAACTGGACGAGCAGCCAGACGGATG
AATGAATTGACAGGGCTGCCTTCTGCCACCATCCACCGCCATCTGGGGCTTGTTGAAGGACAGGAAGAATCCTACCGAGA
TGATTACCTCGAAGCCGACTTCATCATCGTGGATGAGTTTTCTATGGTCGACACTTGGTTGGCAAACCAGCTCTTCCAGA
ACATTTCCTCCCAAACCCAAGTTCTGATTGTCGGCGATGCGGAGCAATTACCTTCTGTCAGTCCCGGTCAGGTCCTTGCT
GACCTCCTGAAAATTGACAAGCTACCCAGCATCACTCTAGAACGTATCTATCGTCAATCCGATGATTCGACTATTGTTAC
CCTAGCCAGCCAGATTCGCCAAGGGGCTCTGCCTAGCGATTTCCGTGAGAAAAAGGCTGACCGCTCCTATTTTGAAGCGC
AAAACGAACAAATTCCAGCCCTGATTGAGCGCATTGTCGGCGCAGCCATCAAGTCGGGCATTCCTGCAAACGAAGTCCAA
ATCCTCGCTCCCATGTACCGTGGGGCCGCAGGCATTGACCAACTCAACACCATGACCCAGGCCCTGCTCAATCCACTGGA
AGAGGGAGAGTTAGAATTCCTCCACAACGATCAAGCCTTCCGCCAAGGTGACCGGGTCATTCATCTAGTCAACAACGCCG
AAGCCAATGTCTTCAATGGTGACTTAGGCTACATCACCGACCTCCTACCTGCCAAATATACGGATTCCAAACAGGATGAA
ATCACCATCAACTTCGACGGTAGCGAAGTCACCTATCCACGCAATGAATGGTACAAGATTACCCTGGCCTATGCCATGTC
CATCCACAAGTCCCAAGGCAGCGAGTTTCAGGTAGTCATCCTTCCCATCACGCGCACCAGCCACCGTATGCTCCAGCGCA
ATCTGGTCTACACCGCCATCACCCGCTCCAAGAGTAAGCTCATCCTCCTGGGCGAAATCTCCGCCTTCGACTACGCCGTC
AAAAACGCCGGAACCGTCCGAAAAACCTATCTGGTCCCACGTTTCCAAGGGGAAATGGCAGAGCAGGATAGCAAGGAAGC
TTTAGCTGAAAAAGCCGAAAGCAAAACAGCGGCAACCACACAAACCCAGCCACCTACACAGCCAGACAGGAAAGAACAGG
TTGATGTAGTCAAAGAAAACAACCAACAACTCTCCCTTCTTGATCAAGACCAGCCAGAAAAAACAAGTCCCCAACCCACA
GAATACATTTTGACTGTAGATAACCTACTAACCATCGACCCCATGATTGGCATAGAACAGGCAGATATTGAAGAATTTTT
TAAAGCATAA

Domains

Predicted by InterProScan.

• AAA domain (AAA_30) (332-529)

• Helix-hairpin-helix containing domain (HHH_RecD2) (148-237)

• Helix-hairpin-helix domain (HHH_5) (97-145)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (663-710)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (575-645)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD/recD2/recDB	Bacillus subtilis subsp. subtilis str. 168	41.842	91.677	0.384