Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   CFN54_RS08850 Genome accession   NZ_CP032635
Coordinates   1764449..1765009 (-) Length   186 a.a.
NCBI ID   WP_016265666.1    Uniprot ID   A0A9N7J0X6
Organism   Latilactobacillus sakei strain ZFM225     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1759449..1770009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFN54_RS08820 (CFN54_08820) rplA 1760736..1761425 (-) 690 WP_016265663.1 50S ribosomal protein L1 -
  CFN54_RS08825 (CFN54_08825) rplK 1761524..1761949 (-) 426 WP_004270859.1 50S ribosomal protein L11 -
  CFN54_RS08830 (CFN54_08830) - 1762075..1762932 (-) 858 WP_016265664.1 alpha/beta fold hydrolase -
  CFN54_RS08835 (CFN54_08835) nusG 1763339..1763887 (-) 549 WP_011375364.1 transcription termination/antitermination protein NusG -
  CFN54_RS08840 (CFN54_08840) secE 1763985..1764164 (-) 180 WP_011375365.1 preprotein translocase subunit SecE -
  CFN54_RS08845 (CFN54_08845) rpmG 1764174..1764323 (-) 150 WP_011375366.1 50S ribosomal protein L33 -
  CFN54_RS08850 (CFN54_08850) sigH 1764449..1765009 (-) 561 WP_016265666.1 sigma-70 family RNA polymerase sigma factor Regulator
  CFN54_RS08855 (CFN54_08855) - 1765087..1765620 (-) 534 WP_016265667.1 NYN domain-containing protein -
  CFN54_RS08860 (CFN54_08860) rlmB 1765624..1766511 (-) 888 WP_011375369.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  CFN54_RS08865 (CFN54_08865) - 1766498..1766905 (-) 408 WP_004265086.1 Mini-ribonuclease 3 -
  CFN54_RS08870 (CFN54_08870) cysS 1766902..1768308 (-) 1407 WP_120760956.1 cysteine--tRNA ligase -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 22072.18 Da        Isoelectric Point: 6.6722

>NTDB_id=317443 CFN54_RS08850 WP_016265666.1 1764449..1765009(-) (sigH) [Latilactobacillus sakei strain ZFM225]
MEQTKRDELLIAAVAQNDSQALDVLFKAYLPMVYHTVAPYYIRLFDEDDWLQEARIVCYETCQCYDCQKGKSFGSFYKLR
FKNHILNLLRRELAQKRRGDRQAVLIAERPEHDAISEDTMTYYQSQFELRCYLETLSPFELVSFRVLTGQLSIDEACCQL
DCTIDQLKRGQSRCQTKLKRYYQENR

Nucleotide


Download         Length: 561 bp        

>NTDB_id=317443 CFN54_RS08850 WP_016265666.1 1764449..1765009(-) (sigH) [Latilactobacillus sakei strain ZFM225]
ATGGAACAAACAAAGCGCGACGAACTGCTGATTGCAGCAGTGGCTCAGAATGATTCACAAGCACTAGATGTATTATTCAA
GGCGTATTTGCCGATGGTGTATCACACCGTGGCGCCATATTATATCCGGTTATTCGATGAAGACGATTGGTTACAAGAAG
CCCGGATTGTTTGTTACGAAACTTGCCAATGTTACGATTGTCAAAAAGGCAAAAGTTTTGGGAGTTTCTATAAATTACGG
TTTAAAAACCACATTTTAAATTTACTACGACGAGAACTCGCACAAAAACGGCGAGGTGATCGTCAGGCAGTATTGATTGC
GGAGCGGCCGGAACACGACGCGATTTCAGAAGATACGATGACTTACTATCAATCGCAGTTTGAATTGAGATGTTATCTTG
AAACGCTGTCGCCTTTTGAATTAGTGTCGTTTCGGGTGCTGACCGGGCAGCTTTCAATTGATGAAGCTTGTTGCCAACTC
GATTGTACGATTGACCAGTTGAAACGAGGCCAATCAAGGTGCCAGACTAAGTTAAAACGGTATTATCAAGAGAATCGTTA
A

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(25-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Latilactobacillus sakei subsp. sakei 23K

97.849

100

0.978

Multiple sequence alignment