Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   D7I46_RS10840 Genome accession   NZ_CP032627
Coordinates   2283060..2283848 (+) Length   262 a.a.
NCBI ID   WP_120772884.1    Uniprot ID   A0A387BGX3
Organism   Lactococcus allomyrinae strain 1JSPR-7     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 2278060..2288848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7I46_RS10820 (D7I46_10820) - 2278993..2279208 (+) 216 WP_120772880.1 hypothetical protein -
  D7I46_RS10825 (D7I46_10825) - 2279242..2279481 (+) 240 WP_120772881.1 hypothetical protein -
  D7I46_RS10830 (D7I46_10830) - 2279922..2281502 (+) 1581 WP_120772882.1 glycosyltransferase -
  D7I46_RS10835 (D7I46_10835) - 2281691..2282905 (+) 1215 WP_120772883.1 pyridoxal phosphate-dependent aminotransferase -
  D7I46_RS10840 (D7I46_10840) codY 2283060..2283848 (+) 789 WP_120772884.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  D7I46_RS10845 (D7I46_10845) gatC 2284035..2284340 (+) 306 WP_120772885.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  D7I46_RS10850 (D7I46_10850) gatA 2284342..2285808 (+) 1467 WP_120772886.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  D7I46_RS10855 (D7I46_10855) gatB 2285810..2287243 (+) 1434 WP_120772887.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29156.51 Da        Isoelectric Point: 4.4696

>NTDB_id=317325 D7I46_RS10840 WP_120772884.1 2283060..2283848(+) (codY) [Lactococcus allomyrinae strain 1JSPR-7]
MATLLEKTRKITAILQDGVTDLQQELPYNSMTERLANVIDCNACVINTKGELLGYSLPYNTNNERVDQFFYDRKLPDEYV
RAAVRIYDTMANVPVDKPLAIFPEEVLSNFPDGVTTLAPIYGSGMRLGTFIMWREDGEFTDDDLILVELATTVIGVQLSN
LKLEQMEENIRKDTMATMAVNTLSYSEMKAVKAIIEELDGEEGHVIASVIADKIGITRSVIVNALRKLESAGVIESRSLG
MKGTYLKVLNTGLFDKLAGRNF

Nucleotide


Download         Length: 789 bp        

>NTDB_id=317325 D7I46_RS10840 WP_120772884.1 2283060..2283848(+) (codY) [Lactococcus allomyrinae strain 1JSPR-7]
GTGGCTACATTACTTGAAAAAACACGTAAAATCACTGCGATTTTGCAAGATGGAGTGACTGATTTGCAGCAGGAACTTCC
ATACAATAGCATGACTGAACGTTTAGCAAATGTCATTGACTGTAATGCCTGTGTGATTAATACGAAGGGCGAGTTACTTG
GTTACTCACTACCTTACAATACTAATAACGAACGTGTTGACCAATTTTTCTATGACCGTAAGTTACCTGATGAATATGTT
CGGGCTGCGGTTCGTATTTATGATACAATGGCAAATGTTCCAGTTGACAAGCCTTTAGCGATTTTCCCAGAAGAAGTGCT
CAGTAATTTCCCTGATGGAGTGACAACTTTGGCACCAATCTATGGTTCTGGTATGCGTTTAGGTACGTTTATCATGTGGC
GTGAAGATGGTGAGTTTACGGATGATGACCTTATTTTGGTTGAGTTGGCAACAACAGTTATTGGTGTTCAACTTTCAAAT
CTCAAACTTGAACAAATGGAAGAAAATATCCGTAAGGATACAATGGCTACAATGGCAGTCAATACGCTTTCTTATTCAGA
GATGAAAGCTGTTAAAGCGATTATTGAAGAGCTTGACGGTGAAGAAGGCCACGTTATTGCTTCTGTCATTGCTGACAAAA
TTGGAATTACACGTTCTGTCATTGTCAACGCTTTGCGTAAGCTTGAATCTGCAGGTGTTATTGAATCTCGTTCGCTAGGT
ATGAAAGGAACTTACCTTAAAGTTCTCAACACAGGTTTATTTGATAAACTTGCTGGACGTAACTTCTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(201-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A387BGX3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

97.328

100

0.973
  codY Bacillus subtilis subsp. subtilis str. 168

47.451

97.328

0.462

Multiple sequence alignment