Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   DZ927_RS27445 Genome accession   NZ_CP039293
Coordinates   5684167..5684592 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain PABL048     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5679167..5689592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DZ927_RS27430 (DZ927_027430) pilX 5679737..5680324 (+) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  DZ927_RS27435 (DZ927_027435) pilY1 5680336..5683821 (+) 3486 WP_019486630.1 type 4a pilus biogenesis protein PilY1 -
  DZ927_RS27440 (DZ927_027440) pilY2 5683823..5684170 (+) 348 WP_003094713.1 type 4a fimbrial biogenesis protein PilY2 -
  DZ927_RS27445 (DZ927_027445) comF 5684167..5684592 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  DZ927_RS27450 (DZ927_027450) ispH 5684637..5685581 (-) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  DZ927_RS27455 (DZ927_027455) fkpB 5685667..5686107 (-) 441 WP_003094726.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  DZ927_RS27460 (DZ927_027460) lspA 5686100..5686609 (-) 510 WP_019486629.1 signal peptidase II -
  DZ927_RS27465 (DZ927_027465) ileS 5686602..5689433 (-) 2832 WP_003094730.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=317196 DZ927_RS27445 WP_003094721.1 5684167..5684592(+) (comF) [Pseudomonas aeruginosa strain PABL048]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=317196 DZ927_RS27445 WP_003094721.1 5684167..5684592(+) (comF) [Pseudomonas aeruginosa strain PABL048]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATTCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCAGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACACCCACCAGCACTACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383