Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   D7J84_RS20020 Genome accession   NZ_CP032608
Coordinates   3831032..3831811 (+) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus thuringiensis strain QZL38     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3826032..3836811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7J84_RS20000 (D7J84_20050) trmFO 3826686..3827990 (+) 1305 WP_000213002.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  D7J84_RS20005 (D7J84_20055) xerC 3828056..3828955 (+) 900 WP_001101242.1 tyrosine recombinase XerC -
  D7J84_RS20010 (D7J84_20060) hslV 3828998..3829540 (+) 543 WP_000526272.1 ATP-dependent protease proteolytic subunit HslV -
  D7J84_RS20015 (D7J84_20065) hslU 3829563..3830954 (+) 1392 WP_000550078.1 ATP-dependent protease ATPase subunit HslU -
  D7J84_RS20020 (D7J84_20070) codY 3831032..3831811 (+) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  D7J84_RS20025 (D7J84_20075) rpsB 3832159..3832860 (+) 702 WP_000111485.1 30S ribosomal protein S2 -
  D7J84_RS20030 (D7J84_20080) tsf 3832964..3833851 (+) 888 WP_001018578.1 translation elongation factor Ts -
  D7J84_RS20035 (D7J84_20085) pyrH 3833918..3834640 (+) 723 WP_000042668.1 UMP kinase -
  D7J84_RS20040 (D7J84_20090) frr 3834643..3835200 (+) 558 WP_000531501.1 ribosome recycling factor -
  D7J84_RS20045 (D7J84_20095) uppS 3835286..3836062 (+) 777 WP_000971296.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=317029 D7J84_RS20020 WP_000421290.1 3831032..3831811(+) (codY) [Bacillus thuringiensis strain QZL38]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=317029 D7J84_RS20020 WP_000421290.1 3831032..3831811(+) (codY) [Bacillus thuringiensis strain QZL38]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTGAACAGTGCTTACACAGCATTCCCAGTAGAAAACAGAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATCTTGCGTGAAAAAGCAGAA
GAAATTGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCACATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GTTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459

Multiple sequence alignment