Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   D6022_RS17730 Genome accession   NZ_CP032538
Coordinates   3323769..3324548 (-) Length   259 a.a.
NCBI ID   WP_003181756.1    Uniprot ID   A0A1Y0YKK2
Organism   Bacillus licheniformis strain MT-B06     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3318769..3329548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D6022_RS17700 fliH 3318810..3319577 (-) 768 WP_016885763.1 flagellar assembly protein FliH -
  D6022_RS17705 fliG 3319561..3320577 (-) 1017 WP_003181768.1 flagellar motor switch protein FliG -
  D6022_RS17710 fliF 3320591..3322192 (-) 1602 WP_003181766.1 flagellar basal-body MS-ring/collar protein FliF -
  D6022_RS17715 fliE 3322243..3322560 (-) 318 WP_003181764.1 flagellar hook-basal body complex protein FliE -
  D6022_RS17720 flgC 3322574..3323026 (-) 453 WP_009328519.1 flagellar basal body rod protein FlgC -
  D6022_RS17725 flgB 3323026..3323415 (-) 390 WP_003181758.1 flagellar basal body rod protein FlgB -
  D6022_RS17730 codY 3323769..3324548 (-) 780 WP_003181756.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  D6022_RS17735 hslU 3324587..3325990 (-) 1404 WP_003181754.1 HslU--HslV peptidase ATPase subunit -
  D6022_RS17740 hslV 3326007..3326552 (-) 546 WP_003181752.1 ATP-dependent protease subunit HslV -
  D6022_RS17745 xerC 3326566..3327480 (-) 915 WP_003181750.1 tyrosine recombinase XerC -
  D6022_RS17750 trmFO 3327547..3328851 (-) 1305 WP_003181748.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29073.42 Da        Isoelectric Point: 4.8196

>NTDB_id=316854 D6022_RS17730 WP_003181756.1 3323769..3324548(-) (codY) [Bacillus licheniformis strain MT-B06]
MALLQKTRKINAMLQNAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGFSINQQIENDRMKKMLEERQFPEDYTKSLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTVVPIIGGGERLGTLILSRLQEKFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLMELEKLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=316854 D6022_RS17730 WP_003181756.1 3323769..3324548(-) (codY) [Bacillus licheniformis strain MT-B06]
ATGGCTTTATTACAAAAAACAAGAAAGATTAATGCAATGCTGCAAAATGCGGCAGGGAAGCCGGTTAATTTTAAAGAAAT
GGCCGAAACGCTTCGCGATGTGATTGATTCGAACATTTTCGTCGTCAGCCGCAGAGGAAAGCTTCTCGGTTTCTCGATCA
ACCAGCAGATCGAAAATGACCGGATGAAAAAAATGCTTGAAGAGCGCCAGTTTCCTGAAGATTATACAAAAAGCCTGTTC
AACATTCCGGAAACGTCATCTAACCTTGACATCAACAGCGAATACACAGCTTTCCCTGTGGAAAACCGCGATTTGTTCCA
AGCGGGTCTGACCACGGTCGTTCCGATCATCGGAGGAGGCGAAAGACTGGGCACCTTGATTCTGTCCCGCCTTCAGGAGA
AATTCGAGGATGACGATCTGATCCTTGCCGAATATGGCGCCACTGTCGTAGGAATGGAAATTCTCAGAGAGAAAGCGGAA
GAGATCGAAGAGGAAGCGCGCAGCAAAGCGGTCGTTCAAATGGCGATCAGTTCACTATCTTACAGCGAGCTTGAAGCAAT
TGAACATATTTTTGAGGAGCTTGACGGAAATGAAGGCCTGCTTGTCGCTAGTAAAATTGCAGACCGCGTCGGCATCACCC
GCTCGGTCATTGTCAACGCGCTCCGTAAACTTGAAAGCGCCGGTGTCATTGAATCAAGGTCACTAGGGATGAAAGGCACA
TACATCAAAGTGCTGAACAACAAATTTTTGATGGAGTTAGAAAAACTAAAGTCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0YKK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment