Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   OEA_RS03400 Genome accession   NZ_CP032527
Coordinates   666114..668471 (+) Length   785 a.a.
NCBI ID   WP_016765617.1    Uniprot ID   -
Organism   Priestia megaterium NCT-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 661114..673471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OEA_RS03380 (OEA_04795) cymR 662471..662887 (+) 417 WP_016765621.1 cysteine metabolism transcriptional regulator CymR -
  OEA_RS03385 (OEA_04800) - 662911..664053 (+) 1143 WP_016765620.1 cysteine desulfurase family protein -
  OEA_RS03390 (OEA_04805) mnmA 664160..665272 (+) 1113 WP_016765619.1 tRNA 2-thiouridine(34) synthase MnmA -
  OEA_RS03395 (OEA_04810) - 665430..666089 (+) 660 WP_016765618.1 lipopolysaccharide assembly protein LapB -
  OEA_RS03400 (OEA_04815) recD2 666114..668471 (+) 2358 WP_016765617.1 ATP-dependent RecD-like DNA helicase Machinery gene
  OEA_RS03405 (OEA_04820) - 668613..668804 (+) 192 WP_013059292.1 hypothetical protein -
  OEA_RS03410 (OEA_04825) - 668830..668964 (+) 135 WP_013059291.1 YrzQ family protein -
  OEA_RS03415 (OEA_04830) - 669079..670140 (+) 1062 WP_013059290.1 AI-2E family transporter -
  OEA_RS03420 (OEA_04835) alaS 670529..673162 (+) 2634 WP_016765616.1 alanine--tRNA ligase -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 88774.22 Da        Isoelectric Point: 5.1108

>NTDB_id=316761 OEA_RS03400 WP_016765617.1 666114..668471(+) (recD2) [Priestia megaterium NCT-2]
MNEGQVNPSQPERHYISGTSIVTVFHNEENLYNVTRIRIKKTNLEIEDKETVVTGYFPKLNEDEVYTFYGDFKEHPKFGL
QFHVEQFKKELPQSRQGVVQYLSSDLFHGIGKKTAENIVDALGERAIFRILQNESVLKEVPRLSADKAEALVTQLREHQG
LEEVMVKLTDLGFGPQLSMKIFQAYKQEALEIVQNNPYQLVEDIQGIGFSRADELGKRLGMATNHPDRLRAGILYVIEQE
CNQMGHVYVTADQLYGKTAELLRKSRHENLSEMDLTREVDALKADKKLIIQDEKIYFPPLFYAEKGLVKAIQKIMAQTQY
EEQFPESEFLLALGELEERLDVQYAPSQRKGIQTALMSPMLLLTGGPGTGKTTVIKGIVELYAELHGCSLNPGDYKKDEA
FPVLLVAPTGRAAKRMSEATGLPAVTIHRLLKWNGQEGFDHNEENPIDGKLLIVDEVSMVDLWLAHQLFKSLPANLQVIL
VGDEDQLPSVGPGQVLKDLLSSEVVPTVRLTDVYRQAEGSSIIDLAHEIKKGKLPEDLSRQQGDRSFIRCQGQHITNVVQ
QVCGNALKKGYTAKDIQVLAPMYKGPAGIDKLNEVLQELFNPASEQRRELKHGDITYRVGDKVLQLVNQPDSNVFNGDMG
EIVSVFFAKENTEKQDMLVISYEGNEVTYTKQDFNQITHAYCCSIHKSQGSEFPIVVLPIVKSYYRMLRRNLLYTAVTRS
KQFLILCGEDEAFQLGVSRNEDSIRQTNLQPLLRESLDNDIEDPEIPFMKDANIGMENVTPYDFM

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=316761 OEA_RS03400 WP_016765617.1 666114..668471(+) (recD2) [Priestia megaterium NCT-2]
ATGAACGAAGGACAAGTGAACCCTTCACAGCCAGAACGTCATTATATAAGCGGCACGTCGATTGTAACGGTCTTTCATAA
CGAAGAAAACTTGTATAACGTTACGCGGATACGGATCAAAAAAACAAATTTAGAGATTGAAGATAAAGAAACGGTCGTCA
CAGGTTATTTTCCTAAGCTTAATGAAGATGAAGTATACACGTTTTACGGGGACTTCAAAGAGCATCCAAAGTTTGGTCTG
CAGTTTCATGTTGAACAGTTTAAAAAAGAACTTCCGCAATCAAGGCAAGGAGTTGTTCAGTACCTATCTAGCGATTTATT
CCACGGAATCGGTAAAAAAACTGCTGAAAATATTGTGGACGCTTTAGGAGAACGAGCGATTTTTCGTATTTTGCAAAATG
AGTCTGTGCTAAAAGAGGTTCCGAGGCTTTCAGCCGACAAGGCAGAAGCTTTAGTCACGCAGCTTCGTGAACATCAAGGG
TTAGAAGAAGTAATGGTAAAGCTGACAGACCTCGGGTTTGGACCGCAGCTTTCGATGAAGATTTTCCAAGCGTACAAACA
AGAAGCGCTGGAAATTGTTCAAAATAATCCTTATCAGCTCGTAGAAGATATTCAAGGTATTGGTTTTAGCCGAGCCGATG
AACTTGGAAAGAGGCTTGGTATGGCAACCAATCATCCTGATCGTTTGCGTGCAGGTATTTTATATGTCATTGAGCAAGAA
TGCAATCAAATGGGACATGTATACGTCACGGCAGATCAGCTGTATGGAAAAACAGCAGAGCTTCTTCGAAAAAGCAGGCA
TGAGAATCTGTCTGAAATGGATCTTACAAGAGAAGTGGACGCATTAAAAGCAGACAAAAAGCTTATCATTCAAGACGAAA
AAATTTATTTTCCTCCCCTTTTCTATGCTGAAAAAGGGCTGGTTAAAGCTATTCAAAAAATTATGGCTCAAACGCAGTAC
GAAGAGCAGTTTCCAGAATCAGAATTCTTATTGGCACTGGGTGAACTAGAAGAGCGATTAGACGTGCAATATGCACCTTC
TCAGCGCAAGGGCATACAAACCGCTTTAATGTCTCCGATGCTTCTCTTAACAGGTGGACCAGGTACAGGGAAAACAACGG
TTATTAAAGGAATAGTCGAACTCTATGCAGAACTTCACGGATGTTCGTTAAATCCAGGGGATTATAAAAAAGATGAAGCT
TTTCCTGTTTTACTTGTGGCACCTACTGGGCGCGCTGCTAAACGAATGAGCGAAGCGACGGGACTTCCAGCAGTTACCAT
TCACAGATTATTAAAATGGAACGGACAAGAAGGATTTGATCATAATGAGGAAAATCCTATTGACGGAAAATTACTGATTG
TGGATGAAGTATCAATGGTAGATTTGTGGCTTGCTCATCAGCTGTTTAAATCTCTTCCTGCTAATTTACAGGTTATTTTA
GTTGGAGACGAAGACCAGCTTCCTTCAGTAGGTCCGGGACAGGTGTTAAAAGATTTACTGAGTTCAGAAGTAGTTCCGAC
CGTCCGTCTTACAGATGTATACCGGCAAGCGGAAGGATCGTCAATTATTGATTTGGCTCATGAAATAAAAAAAGGAAAGC
TTCCGGAAGACTTATCAAGGCAGCAAGGAGATCGTTCTTTTATTCGTTGTCAAGGACAGCACATCACGAACGTCGTGCAA
CAAGTTTGCGGGAATGCGTTAAAAAAAGGCTATACGGCTAAAGATATTCAAGTTCTAGCTCCTATGTATAAAGGTCCTGC
AGGTATTGATAAGCTGAATGAAGTTCTTCAGGAATTATTCAACCCGGCTTCCGAGCAAAGAAGAGAGCTTAAGCACGGAG
ATATCACGTACCGAGTGGGAGATAAAGTGCTGCAGCTTGTAAATCAGCCGGATAGCAACGTATTTAACGGAGATATGGGA
GAAATCGTCTCGGTTTTCTTTGCCAAAGAAAATACGGAAAAACAGGATATGCTGGTTATTTCATATGAAGGAAATGAAGT
AACTTACACAAAGCAAGACTTTAATCAAATAACTCATGCATACTGCTGTTCCATTCATAAATCACAGGGAAGTGAATTTC
CCATTGTTGTGCTTCCAATTGTTAAAAGCTATTACCGGATGCTGCGGCGCAATTTACTTTATACCGCCGTTACGCGAAGC
AAACAGTTTTTAATTTTATGCGGCGAAGACGAAGCGTTTCAGCTTGGCGTCAGCCGAAATGAAGACAGCATCCGACAAAC
GAATTTACAGCCGTTGCTTCGAGAAAGCTTGGATAACGACATAGAAGATCCCGAAATTCCATTTATGAAAGATGCAAATA
TTGGGATGGAAAACGTTACGCCGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(344-551)

Helix-hairpin-helix containing domain (HHH_RecD2)

(157-248)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(592-659)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(679-727)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

63.811

99.618

0.636

Multiple sequence alignment