Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   D6I99_RS06485 Genome accession   NZ_CP032522
Coordinates   1251564..1252079 (-) Length   171 a.a.
NCBI ID   WP_136696329.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BC     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1246564..1257079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D6I99_RS06470 - 1246676..1248493 (-) 1818 WP_136696326.1 motility associated factor glycosyltransferase family protein -
  D6I99_RS06475 - 1248490..1250313 (-) 1824 WP_136696327.1 motility associated factor glycosyltransferase family protein -
  D6I99_RS06480 - 1250323..1251564 (-) 1242 WP_136696328.1 DUF2920 family protein -
  D6I99_RS06485 ctsG 1251564..1252079 (-) 516 WP_136696329.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  D6I99_RS06490 tsaD 1252080..1253087 (-) 1008 WP_136696330.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  D6I99_RS06495 - 1253084..1254478 (-) 1395 WP_057096244.1 M99 family carboxypeptidase catalytic domain-containing protein -
  D6I99_RS06500 dxr 1254480..1255550 (-) 1071 WP_052821042.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  D6I99_RS06505 cdsA 1255547..1256272 (-) 726 WP_052782285.1 phosphatidate cytidylyltransferase -
  D6I99_RS06510 - 1256281..1256619 (-) 339 WP_136696331.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18620.57 Da        Isoelectric Point: 7.8497

>NTDB_id=316666 D6I99_RS06485 WP_136696329.1 1251564..1252079(-) (ctsG) [Campylobacter jejuni strain BC]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLGN
FNGTKEVNFRVGDDKKCLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFISSSSSKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=316666 D6I99_RS06485 WP_136696329.1 1251564..1252079(-) (ctsG) [Campylobacter jejuni strain BC]
ATGAAAAAAGCTTTTACCATATTAGAACTTGTTTTTGTGATTGTTATTTTAGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGCAAGGATGAAGCTGAAGTTAGTAAGTCTTTAAATAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTCGATCTTGGCAAT
TTTAATGGTACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAAAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTATAAGCTCTTCTAGTAGCAAAGCTTGCGTGATCTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

93.567

100

0.936

Multiple sequence alignment